Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242645.1_202017-08-07] 50 sequences; 11,623,528 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq40 156 4e-33 seq14 149 5e-31 seq16 147 2e-30 seq19 127 2e-24 >seq40 Length=705427 Score = 156 bits (172), Expect = 4e-33 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || ||| |||| || ||| | || ||||| ||||| ||| | || ||| | ||| Sbjct 667915 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 667856 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | |||||| || ||||||||||||||||| || ||||| || ||||| | || Sbjct 667855 GACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTG 667796 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | ||||| ||||||||||||||| Sbjct 667795 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAG 667736 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| || ||| | ||| | ||||| || Sbjct 667735 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTAT 667695 >seq14 Length=538356 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | ||||| ||| ||||||| |||||||| ||| | || Sbjct 529688 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCA 529629 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||||||||| ||||| || ||||| || ||| Sbjct 529628 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAA 529569 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || |||||||||||| | || | || || |||||| Sbjct 529568 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTACAAC 529509 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || ||||| ||||| ||| | ||| | ||||| Sbjct 529508 ATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 529462 >seq16 Length=189800 Score = 147 bits (162), Expect = 2e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||| |||||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 50626 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 50685 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||| ||||||||||| ||||| || || || || ||||| | ||| Sbjct 50686 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 50745 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | || || |||||||| |||||| Sbjct 50746 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 50805 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| || ||| | ||| | ||||| || Sbjct 50806 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTAT 50846 >seq19 Length=415998 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26979 TTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTG 27038 ||| || | ||||| || || || || || ||||| || ||| |||||||| | || || Sbjct 68451 TTAGACACTATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTC 68392 Query 27039 GAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCA 27098 ||| | || || | || || | ||||| ||||| || ||||| |||||||| || Sbjct 68391 GAATCTTCTGATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCT 68332 Query 27099 CCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC 27158 || || |||||| | || || | ||| || |||||| |||||||| || || | || Sbjct 68331 CCGGACCAACAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCG 68272 Query 27159 GATTACAACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||||||||||||||| || || | || ||||| Sbjct 68271 GATTACAACATTCAAAAGGAATCCACTCTTCACTTGGT 68234 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||||||||| ||| | || || | || || ||| || Sbjct 67986 ATGCAGATTTTTGTCAAAACTCTGACCGGTAAGACCATAACCTTGGAGGTTGAATATTCT 67927 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| ||||| || || || || ||| Sbjct 67926 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 67867 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || |||||| |||||||| || || | || ||||||||| Sbjct 67866 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 67807 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||||||| ||||| || | || ||||| Sbjct 67806 ATTCAAAAAGAGTCCACTCTTCACTTGGT 67778 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || ||| |||| ||| | || || ||| | || Sbjct 68214 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 68155 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| ||||| || || || || ||| Sbjct 68154 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 68095 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || ||||| |||||||| || || | || ||||||||| Sbjct 68094 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 68035 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||| || ||| | || ||||| Sbjct 68034 ATTCAAAAGGAATCTACCCTTCACTTGGT 68006 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||| | || || ||| |||| ||| | || || ||| | || Sbjct 67758 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 67699 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| ||||| || || || || ||| Sbjct 67698 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 67639 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| ||||||| || || | || || || ||| Sbjct 67638 CAGAGATTGATTTTTGCAGGGAAACAACTGGAAGATGGTAGAACGCTGTCAGACTATAAC 67579 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||| || ||| | || ||||| Sbjct 67578 ATTCAAAAGGAATCTACCCTTCACTTGGT 67550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918128176000