Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq224 109 4e-19 >seq224 Length=1007144 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || || || || | |||| ||| ||||| | ||||| || |||| || | | Sbjct 62064 AGTCTCAAGACTAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCTGACAGAGTTCTT 62123 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||| |||||| || || |||||||||| ||| || || | || | |||||| Sbjct 62124 CCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCTTCC 62183 Query 43012 TTTTCGCTGATCA-ACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGT 43070 || || |||| |||||| || || | | ||||| || ||||| |||| || Sbjct 62184 TTGTCCTGGATCTTACTCTTC-ACATTGTCTATGGTGTCAGAAGATTCGACCTCTAAAGT 62242 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || |||| |||||| |||||||||||||| Sbjct 62243 GATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 62281 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||||| ||||| || | || |||||||| | |||||||| |||| || | Sbjct 62520 AGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTA 62579 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||| ||||| || ||||||||||||| |||||| || | || | |||||| Sbjct 62580 CCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCC 62639 Query 43012 TTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGT 43070 || || |||| |||| || || || | | ||||| || ||||| || | || Sbjct 62640 TTGTCCTGGATCTTACTC-TTCACATTGTCTATGGTGTCAGAAGATTCGACCTCCAAAGT 62698 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || ||||||||||| |||||||| ||||| Sbjct 62699 GATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 62737 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | |||| ||||||||| | ||||| || ||| Sbjct 461563 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 461504 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| |||||||| || || ||||| ||||||| ||||| || | || Sbjct 461503 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 461444 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| ||||| || ||| ||||| || || || Sbjct 461443 ATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACT 461384 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 461383 TCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 461334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367522369926