Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq224 168 2e-36 seq235 147 5e-30 seq201 147 5e-30 seq257 141 2e-28 >seq224 Length=1007144 Score = 168 bits (186), Expect = 2e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || ||||| || ||||| || || || Sbjct 62736 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCC 62795 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 62796 GACAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 62855 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || | || || || || | ||||| || ||| Sbjct 62856 GGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCG 62915 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||||| | ||||||||||||||||| ||||| || || || || ||||| ||| || Sbjct 62916 ACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCATAGTGTCTA 62973 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || || ||||| ||||| || || || Sbjct 62280 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCC 62339 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 62340 GATAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 62399 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| | || || || || | ||| || | ||| Sbjct 62400 GGAATACCTTCCTTGTCCTGGATCTTAGACTTGACGTTATCGATGGTGTCAGAATATTCA 62459 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || |||||||| || || ||||| ||||| |||||||| Sbjct 62460 ACCTCCAAGGTTATGGTCTTACCGGTCAGAGTTTTGACAAAAATCTGCAT 62509 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || || || | || | |||||||| || ||||| || || || Sbjct 62508 ATACCACCTCTTAGTCTTAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCC 62567 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||| ||||| | ||||| || |||||||| | |||||||| || ||| Sbjct 62568 GACAGCGTTCTACCATCTTCCAACTGTTTACCTGCAAAAATCAATCTCTGTTGGTCTGGA 62627 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || ||||| |||| ||| || || ||| Sbjct 62628 GGAATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCG 62687 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || |||||||||||||| || ||||| ||||| |||||||| Sbjct 62688 ACCTCCAAAGTGATAGTCTTACCAGTTAGAGTTTTGACAAAAATCTGCAT 62737 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | |||| || | || || ||||| ||||| || ||||| Sbjct 62052 ATACCACCTCTTAGTCTCAAGACTAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCT 62111 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || |||||||| ||||| ||||| | ||||| || || || Sbjct 62112 GACAGAGTTCTTCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 62171 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || ||||| |||| ||| || || ||| Sbjct 62172 GGAATACCTTCCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCG 62231 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || |||||||||||||| | ||||| ||||| || ||||| Sbjct 62232 ACCTCTAAAGTGATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 62281 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || || || || || || || |||||||| | |||||| |||||||| | ||| Sbjct 461539 TGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCCAATTGC 461480 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || |||||||| Sbjct 461479 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTA 461420 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| || || ||| || || || |||||||||||||| || Sbjct 461419 GACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTACCGGTT 461360 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 461359 AAAGTCTTGACGAAAATTTGCATCTTG 461333 >seq235 Length=640350 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || ||||| || ||||| Sbjct 599129 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 599188 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 599189 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 599248 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| | ||| ||||| || | ||| || || ||| Sbjct 599249 GGGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCA 599308 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||| || || ||||||||||| Sbjct 599309 ACTTCTAGAGTGATGGTCTTACCAGT 599334 >seq201 Length=186330 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || || || || |||||| Sbjct 47043 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 46984 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| |||| || ||||| |||||| Sbjct 46983 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGA 46924 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 46923 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 46864 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | ||||| ||||| Sbjct 46863 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 46823 >seq257 Length=84383 Score = 141 bits (156), Expect = 2e-28 Identities = 291/428 (68%), Gaps = 21/428 (5%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || |||||||| |||||||| | || ||||| |||| ||||| ||||| || || Sbjct 40786 GACGGTATCGTCAACGAAAACTTGGTCGAGAACTTCTCCACCGAGGTCCAGATCCCGGAG 40845 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 |||| |||| ||||| |||||||| || || || || || || || || | ||| Sbjct 40846 GCCAAGAGTTTCTACGGGTTCCAGATCGCGATCGAGAACATCCACTCCGAAACCTACTCC 40905 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || || || || || || | || ||| |||| || | | || ||| | | Sbjct 40906 TTGTTGATCGACACCTACATCAAGGACCCCAAGGAAAGC----GAGT-TCTTGTTCAACG 40960 Query 269057 AGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA 269107 | || || | | | || ||||| | |||||||| || | |||||| Sbjct 40961 CCATCGACACCATCCCAGAAATCTGCGAGAAGG----CCGAATGGGCCCTTAGATGGATC 41016 Query 269108 AACGATAGCGCG--CCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATA 269164 | || || ||| | ||| ||||| | || || || ||| | | |||||| | Sbjct 41017 CAGGACGCCGATGCCCTGTTCGGTGAAAGACTGGTCGCGTTCGCCTCCATCGAAGGTGTC 41076 Query 269165 TTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA 269224 |||||||| ||||| || ||| | ||||| ||||||||||||||||| | ||||| || Sbjct 41077 TTCTTTTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAGAGGTATGATGCCCGGT 41136 Query 269225 TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || || ||||| |||||| |||| |||| ||||||||||| ||| |||||| || ||| Sbjct 41137 TTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGT 41196 Query 269285 TTATTATT 269292 || || || Sbjct 41197 TTGTTGTT 41204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391805725476