Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq235 109 5e-19 seq224 105 6e-18 seq257 102 7e-17 seq201 100 2e-16 >seq235 Length=640350 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || || || || ||||| || | || || | ||||| || | |||||||| Sbjct 599349 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 599290 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | |||||| |||||| ||||||||||| || || || || ||||| ||| || Sbjct 599289 GACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTG 599230 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||| | ||||| | |||| | | ||| || ||||||||||| Sbjct 599229 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAG 599170 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || | |||||||| || ||||||||||| || Sbjct 599169 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 599132 >seq224 Length=1007144 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||||||| || | || || | || ||||| | Sbjct 62281 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 62222 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| ||||| || || || || || Sbjct 62221 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAG 62162 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 |||||| |||||| || || || ||||| || |||| |||| ||||| | || | Sbjct 62161 CAGAGATTGATTTTCGCTGGTAAACAACTGGAGGATGGAAGAACTCTGTCAG--ACTACA 62104 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||| || || |||| ||||| || ||| | ||||| || Sbjct 62103 ACATTCAAAAAGAGTCCACTCTTCACTTAGTCTTGAGACTAAGAGGTGG 62055 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||| || | || || | || ||||| | Sbjct 62737 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 62678 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||| ||||| ||||| || ||||| || ||| Sbjct 62677 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 62618 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| | || || || | ||||||| |||| | ||||| ||| Sbjct 62617 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 62558 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| |||||||| |||| || || ||||| | ||||| || Sbjct 62557 ATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAGACTAAGAGGTGG 62511 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || || || ||||| || || | |||||| | ||||| || | Sbjct 461333 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATC 461392 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 |||||||| || | ||||| |||||| ||||| ||||| || || || || Sbjct 461393 TTCAGACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGA 461452 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||||| ||| |||| | | || |||||| | ||||| | ||||| | || || Sbjct 461453 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTA 461512 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || || || | || || || || ||||||||||| || Sbjct 461513 CAACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 461563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || ||| | ||||| || | ||||| | || ||||| | Sbjct 62965 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 62906 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| || || ||||| |||||||| ||||| || ||| Sbjct 62905 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 62846 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || || || ||||| ||||| | |||| | ||||| ||| Sbjct 62845 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCGGATTACAAC 62786 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| ||||| || |||| || || |||| | ||||| || Sbjct 62785 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 62739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 62449 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 62390 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 ||||| |||||| || || || ||||| ||||| | |||| || | || |||| || Sbjct 62389 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAA-CGCTATCGGATTACAA 62331 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||| || || |||| || || |||| | ||||| || Sbjct 62330 CATTCAAAAAGAGTCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 62283 >seq257 Length=84383 Score = 102 bits (112), Expect = 7e-17 Identities = 348/532 (65%), Gaps = 34/532 (6%) Strand=Plus/Minus Query 104887 CAGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGTAAGTCAAG 104946 ||||||||||| |||||||| ||||| ||||| | || ||||||||| | | ||||| Sbjct 41195 CAGGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAGAAGGTCAAA 41136 Query 104947 CCAGGTAGAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAACTACCGGAG 105006 || || | ||| ||| |||| || || |||||| || || ||||| Sbjct 41135 CCGGGCATCATACCTCTTT-----TCTTCAA-CCAGAAGATGGAGGCGAAGGACCCGGAA 41082 Query 105007 AAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAATGTAGCAGTTTGA 105066 || ||||||||||||| | ||| |||||||||| | ||| |||| ||| | | Sbjct 41081 AAGAAGACACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACCGAACAGGGCA--TCGG 41024 Query 105067 CTT--TCAATCCATTTCTGAGCCCATGTTGCCTTCCGTTTGACGCTATC---AATGTGCT 105121 | | | |||||| | | |||||| |||||| | | | | || ||| | Sbjct 41023 CGTCCTGGATCCATCTAAGGGCCCATTCGGCCTTC---TCGCAGATTTCTGGGATGGTGT 40967 Query 105122 CGATGGCATTCAAAATCCTGTCGCATTCCTGAGGATCTTTAATGTA---TTCGA-CCACA 105177 ||||||| || || | |||| ||||| || || || ||||| |||| | ||| Sbjct 40966 CGATGGCGTTGAACAAGAACTCGCTTTCCTTGGGGTCCTTGATGTAGGTGTCGATCAACA 40907 Query 105178 AGAATGTTGTACATTTCCGTGTGAACGCACTCGATAGATGTCTGTTGCGCATAGAAAAAA 105237 || | ||| |||| | ||| | | |||||| | |||| | | |||||| Sbjct 40906 AGGA----GTAGGTTTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAACTC 40851 Query 105238 GACGCCTCC---ATTTCGGGCACGGCCGACTGCATGTGCTCGATGATATTAGTGTTCACG 105294 |||||| || | | | ||| || | || ||||| | || ||| ||| Sbjct 40850 TTGGCCTCCGGGATCTGGACCTCGGTGGA---GAAGTTCTCGACCAAGTTTTCGTTGACG 40794 Query 105295 ATGACGTCGGCAGCGGCAAAAAACGCGAGAACGTGCTTCAAA--AAGAATCGTTCTTTAT 105352 || |||||| ||||| || || || || || || | | ||||||| ||| || | Sbjct 40793 ATACCGTCGGAGGCGGCGAAGAAGGCAAGCAC--TCTGGAGATGAAGAATCTTTCGTTTT 40736 Query 105353 CGTTCAGTTTGTTGTTCCAATCGTCAAAGTCTTTGGACATGTCGATTTCTTC 105404 |||||| | |||||||||| |||| | ||| ||||||| ||||||||| || Sbjct 40735 CGTTCATTCTGTTGTTCCAGTCGTGGATGTCCTTGGACAAGTCGATTTCCTC 40684 >seq201 Length=186330 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| ||||| || ||||| || | || || | ||||| || | ||||| || Sbjct 46823 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 46882 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | ||||| ||||||| ||||| ||||| || ||||| || ||||| ||| | Sbjct 46883 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 46942 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || |||||| | ||||| | |||| | | || || ||||| ||||| Sbjct 46943 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 47002 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || | |||||||| || ||||||||||| || Sbjct 47003 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 47040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933657789285