Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq373 275 3e-69 >seq373 Length=3671 Score = 275 bits (304), Expect = 3e-69 Identities = 668/996 (67%), Gaps = 32/996 (3%) Strand=Plus/Plus Query 59910 TCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAAC 59969 || |||||||| | ||| || ||||| ||||| ||||| | ||| ||||| |||||||| Sbjct 1352 TCCTCGAACATGATGTACGGGTAGCCGGACTCGAACTGGAGCTCGGCGATCGTCTGGAAG 1411 Query 59970 AGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTAC 60029 | | || || | ||| ||||| ||| | || | | | | ||||||| Sbjct 1412 AAGTCGCGCGCCTTGATCTTCGTCTTGCGGATGCGCGAGTCGTCGACCATCTCGTCGTAC 1471 Query 60030 ATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGGA 60089 ||||||| | |||| |||| | | ||| ||||| || | || ||| || || Sbjct 1472 TTCTCGGTGATCGAGATGTCGGCGAACGGCTTGCCGTAGACGCGCTCGACGTCGTACGGC 1531 Query 60090 GAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGATA 60149 ||||| ||| ||| |||| ||| ||| || || |||||||| || || | | Sbjct 1532 GAGAAGAGGTACATGTCCTCGTTCTTCTTCGCGAGCTCGAACGTGATGTCCGGGATCACG 1591 Query 60150 ACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATCC 60209 || || || || || ||||| || |||||||||||||| ||||| || |||||||| || Sbjct 1592 ACGCCGAGCGACAGCGTCTTGATGCGGATCTTCTCGTCCGCGTTCTCGCGCTTGGTGTCG 1651 Query 60210 AGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCCTT 60269 |||||| | ||||||||||||||| |||| || || || || || |||||||| | Sbjct 1652 AGGAACCGCATGATGTCGGGGTGGTGCGCGTGCAGGTACACGGCACCGGCGCCCTGGCGC 1711 Query 60270 GCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGACT 60329 || || || ||||| | ||||||||| || || || | ||||||||| |||||||| Sbjct 1712 GCGCCGAGCTGGTTCGCGTAGGAGAACGAGTCCTCGAGCAGCTTCATCACGGGGATGACG 1771 Query 60330 CCAGAGGCCTGACCTTCTCGA--CCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGA 60387 || || | ||| ||||||| ||| || || || || |||||||| ||| || | Sbjct 1772 CCGGACGACTG--GTTCTCGATGTGCTTGATGGGCGCGCCGTGCTCGCGGATGTTCGACA 1829 Query 60388 ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGAGAGAGTCCTGAACGATTCGAC 60447 | | |||| ||||| || ||||| || ||||| || | | | | | || Sbjct 1830 GGAGCAGGGCGACGCCGCCGCCGCGCTTGGAGAGCTGCAGCGCGGAGTTGATGCCGCGCG 1889 Query 60448 CGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGCATGATACTGGCTTGCCTGCGT 60507 |||||||| ||||| |||||| | || | |||||| || || |||| ||| ||| Sbjct 1890 CGATGGACTCCATGTTGTCCTCGATGCGCAGCAGGAAGCACGACACGGGCTCGCC-GCGC 1948 Query 60508 CGAGAAGCCCCG-CGTTGAGGAAGGTCGGAGTTGCAGGCTGGAAGATTCCCTTGATAATG 60566 | | ||| |||||||||| || || || || ||||||||| ||| || ||| Sbjct 1949 TGCGCCTTGCCGACGTTGAGGAACGTGGGGGTCGCGGGCTGGAAGCGGCCC--GA-GATG 2005 Query 60567 AGATCCACAAGGGACT-CAGCGTGCTCGAAGTCTTCGCTGTAGTGGATGGCCGTGAG-TA 60624 | ||| | | | | ||||| | | || | || || | || ||||| | | | Sbjct 2006 ACCTCCTCGACGATGTCCAGCGCG-GCCTGCTCGTTGCCGTCGGCGA-GGCCGAGCGCGA 2063 Query 60625 CC------ACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCCATCGTTAGTCTTCAAGG 60678 || || || || ||| |||||||| |||||||| || ||| ||||| | | Sbjct 2064 CCATGCAGACGCGGTCCTCGAAGCGCTCGAGGTAGCGCTTCCCGTCGAACGTCTTGAGCG 2123 Query 60679 CGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAAGCGGAACTTGTGTCCGT 60738 ||| || | ||| |||| | || || | | | |||| |||||||||||| | ||| Sbjct 2124 TGTACGACGTGTAGTACTTGAAGGCGCCGAGGAACGTCTCGAAGCGGAACTTCTTCGCGT 2183 Query 60739 AGGCCTGTTTCATGAGTCTCTTTAGGTCCTCGAAGCCGTA----GCGAAGGACGACATCC 60794 |||| | | | ||| | | |||| | |||| ||| |||||| || Sbjct 2184 AGGCGAACTCGAACAACGACTTCACGAACTCGCGGTCGTACTTCGCG-AGGACG---GCC 2239 Query 60795 TTGTCCCA-TAGTTGGACTTCCTCTGTGAGGTGATCCACCTTCTCCTCTAGGGAGTGAAA 60853 ||| | || ||| | ||| ||||| |||| ||||||| | ||| ||| || Sbjct 2240 GGGTCGTAGTACTTG----TTCTCGACGAGGTAGTCCAGCTTCTCCGCGAGGTCGTGGAA 2295 Query 60854 GAATACGGTGTTCTTGTTGACGTGCTCCAGGAAGTA 60889 ||| |||||||||| ||||||||||| ||||||||| Sbjct 2296 GAAGACGGTGTTCTGGTTGACGTGCTGCAGGAAGTA 2331 Score = 158 bits (174), Expect = 5e-34 Identities = 288/417 (69%), Gaps = 10/417 (2%) Strand=Plus/Plus Query 58400 GCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTA---CCGACTTAGCAGAGGTTCGGAT 58456 |||||| | |||||| || || |||||||| || | || || | | |||| ||||| Sbjct 325 GCAGCTGACGCAACCCTCGACCTCCGTGCCCTCCAGGGCCATCTGA-CGGAGG--CGGAT 381 Query 58457 GTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCG 58516 |||||| || | ||| | |||||| |||||||||||||| ||||| | ||| || Sbjct 382 GTAGTAGAGCGTCTTGATGCCCTTGCGCCACGCGTAGATCTGCGCGCGGTTGACGTCGCG 441 Query 58517 CGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGA 58576 ||| || | || || ||||||||||||||| || |||||||| || | | Sbjct 442 CGTCGTGACCGTGTCCTTGAAGAACAGCGTGAGGCTCAGACCCTGGTCGACGTGCTGCGT 501 Query 58577 TGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCGCTATCAATT 58634 || | |||||| | || |||||| | ||| ||||| |||| ||| || Sbjct 502 CGCGGCGGCGTACGTGTCGATGATCTTCTCGTAG--CCGATCTCGTACGCGTCCTCGTAG 559 Query 58635 GATTCTACATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAGCTTACCC 58694 | || | || || || |||| | | ||||| ||||| || || | ||| ||| Sbjct 560 TACTCGAGGTTGTCGTTCGTCAGGTAGGGCGCCGGGTAGTAGACGCGCCCGATCTTGCCC 619 Query 58695 TCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAATG 58754 |||||||| | ||| | || | ||| ||||| ||||||| ||| | | ||| ||| Sbjct 620 TCCTTGCGGATCTCGATCTTCGACGGCACCGGGTGGATCGAGGACGTCGAGTTGTTGATG 679 Query 58755 TACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACCATGC 58811 || ||||| ||||| || || |||| |||||||||||||||||||| || || ||| Sbjct 680 TAGGAGATCGAGCCCGTCGGCGGGACGGCCTGGAGGTTCTGGTTGTAGATCCCGTGC 736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225726770276180