Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq224 114 1e-20 seq235 111 1e-19 seq201 104 2e-17 >seq224 Length=1007144 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | ||| || ||| ||||| ||| Sbjct 62535 TGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCATCTTCCAACTGT 62594 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||||| || ||||| || ||||| ||||| || || || || || Sbjct 62595 TTACCTGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCCTGGATCTTA 62654 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | |||| |||||| ||||| ||||| || | ||| | || || || ||| Sbjct 62655 CTCTTCACATTGTCTATGGTGTCAGAAGATTCGACCTCCAAAGTGATAGTCTTACCAGTT 62714 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 |||||||| |||||||| ||||| Sbjct 62715 AGAGTTTTGACAAAAATCTGCAT 62737 Score = 113 bits (124), Expect = 4e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGG--TTT 45180 || ||||| |||| || || || || || ||||| || || || || |||| | || Sbjct 62064 AGTCTCAAGACTAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTC--TGACAGAGTTC 62121 Query 45181 TAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTT 45240 | ||| |||| |||||| || ||| | ||||||| |||||||| || ||||| |||| Sbjct 62122 TTCCATCCTCCAGTTGTTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCTT 62181 Query 45241 CTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAG 45300 | || || || || || || | |||| |||||| ||||| ||||| || | || Sbjct 62182 CCTTGTCCTGGATCTTACTCTTCACATTGTCTATGGTGTCAGAAGATTCGACCTCTAAAG 62241 Query 45301 TAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | | || || || |||| |||||| |||||||||||||| Sbjct 62242 TGATAGTCTTACCAGTTAAAGTTTTGACAAAAATTTGCAT 62281 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || | || || ||||||||||| || || || | ||| | Sbjct 461551 CTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCG 461492 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || ||||| ||||| || Sbjct 461491 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 461432 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | |||||| ||||| || ||||| || |||| Sbjct 461431 TCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATA 461372 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| ||| || || |||||||||||| Sbjct 461371 GTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATC 461336 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | ||| || || |||| |||| Sbjct 62763 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCGTCTTCCAGTTGT 62822 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| | || |||||||| ||||||||||| || || || ||||| Sbjct 62823 TTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATTTTG 62882 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || ||||| ||||| || | ||||| || || || || Sbjct 62883 GACTTGA-CGTTGTCGATAGTATCAGAAGATTCGACCTCCAAAGTAATAGTCTTACCAGT 62941 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||||||||| Sbjct 62942 CAGTGTCTTGACGAAAATTTGCAT 62965 >seq235 Length=640350 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || ||||||||||| || || || ||| | |||| || Sbjct 599144 CTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCG 599203 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || |||||||| Sbjct 599204 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTG 599263 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || ||||| || | |||||| ||||| || ||||| ||||| | Sbjct 599264 TCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAGAGTGATG 599323 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAA 45331 || || || || | ||| || || || Sbjct 599324 GTCTTACCAGTCAAAGTCTTAACGAA 599349 >seq201 Length=186330 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || || || | |||| || Sbjct 47028 CTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCG 46969 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | || |||| ||| ||||| || || || ||||| || Sbjct 46968 TCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGGATACCTTCCTTG 46909 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| |||| || | ||||| ||||| || ||||| | ||| | Sbjct 46908 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATG 46849 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAA 45332 || || || || | |||||| |||||| Sbjct 46848 GTCTTACCAGTCAAAGTTTTGACAAAA 46822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000674432120