Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq35 224 3e-53 seq57 122 3e-22 seq426 113 1e-19 seq190 93.3 1e-13 seq301 89.7 2e-12 >seq35 Length=195003 Score = 224 bits (248), Expect = 3e-53 Identities = 616/935 (66%), Gaps = 14/935 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 ||| ||| |||| ||||| || |||||||| | || | || |||||| ||||| ||| Sbjct 51122 CAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGAG-CGGAGTATTCAACAATTTCA 51064 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||||||| |||||| |||||| || || ||||| ||||| ||||| ||||||||| Sbjct 51063 CAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCCTGTTACAA 51004 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG- 155764 ||||||||||| | || | || || || || ||| | ||||| |||| || | || Sbjct 51003 GCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTTTGTGCTTCCA--ATATAGAGT 50946 Query 155765 -CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATAT 155823 ||| | | |||| || || ||| | |||||| || || ||| Sbjct 50945 ACCACAATTTTTGGGCCTTGATAGTCTTACCA---CGGCCTTCTTTTTCGTAACGGGTAT 50889 Query 155824 ACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG-GCACTTATCGGGGCAA 155882 | || | | | || |||||||| || ||||| | || || || | | || | | Sbjct 50888 ATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTAAGCCTGGAGCCGATGTAGGAG-AG 50830 Query 155883 AACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATA 155942 || | | |||| | || | ||||||| ||| || | ||| |||| | | Sbjct 50829 AATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACCCATAGA 50770 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 || ||| | || || || || || | ||||||||||| | | || | | Sbjct 50769 GCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATG 50710 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG 156062 || || ||||||| || |||||||| ||| | |||||| |||| |||||| Sbjct 50709 AAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGTCTCTTG 50650 Query 156063 ---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 |||||||| || ||||| || ||||| || |||||||||| | ||||||||| | Sbjct 50649 TTACCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATAGGAATTAAC 50590 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || || ||||| || || || || ||| | || || | || |||| || |||||| Sbjct 50589 CCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATA 50530 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 ||||| ||||||||||| | ||| ||||| ||| |||||||| | ||| | | | Sbjct 50529 TGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAG 50470 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||||||||| |||||||| | ||||| | ||| | || || | |||||| | Sbjct 50469 ATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTT 50410 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 ||||| ||||||||||||| || || | || ||| |||| || || ||||| | Sbjct 50409 GGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAG 50350 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 | || || || | ||||| ||| |||||||||| | | ||| ||||| Sbjct 50349 TTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATG 50290 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 | || || ||||| || ||| || | | || || | ||| | ||||| Sbjct 50289 ATTAAGTGTTGTGGACGTTCAGCAACTTGACCGTTGACTCTCAATAAGTACGAACGTTCT 50230 Query 156480 AGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 | ||||||||| ||||| ||| || ||||||| Sbjct 50229 AAAGTTTTAAAACCGAAGTAACTGTACTGAAAATC 50195 >seq57 Length=156688 Score = 122 bits (134), Expect = 3e-22 Identities = 291/440 (66%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||| || || || || || ||||| || |||||||||| | ||| ||||| | Sbjct 58616 TTACCACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATGGGAATCAAC 58557 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || || ||||| || ||||| || ||||| || || | || |||| ||| | ||| Sbjct 58556 CCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATA 58497 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || |||| |||||||| || ||||| || || || || | ||| | | || Sbjct 58496 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAA 58437 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||||||||| || || || | ||| | | || | || ||| | |||||| || Sbjct 58436 ATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGATGT 58377 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 || || || || || |||||||| || | || || | || || | ||||| | Sbjct 58376 GGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAACGACATCAAG 58317 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 | ||| |||| | | ||| | || |||||||||| | | || | ||| Sbjct 58316 TTGTAAGTCTTCAGCACGGACTCGATATCGCTGCCGTGAATACCTAGGGCCACACGCATG 58257 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 || ||| || ||||| || | | | || || | || || ||||| | |||||| Sbjct 58256 ACCAAATGTTGGGGACGTTCGGCCACTTCACCGTCTAGTCTTAGCAGGTAGGAACGTTCC 58197 Query 156480 AGAGTTTTAAACCCGAAATA 156499 ||||| |||||||| ||||| Sbjct 58196 AGAGTCTTAAACCCAAAATA 58177 >seq426 Length=100507 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| | || ||| || ||| || ||||| | | |||| ||||||||| Sbjct 82101 TTTCTTGTGGTGTTGTCGTAATGAACCATGATATCTTCTAGAGCTTTGACTAAACGACGT 82160 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 82161 TGAATATAACCTGTTTCAGCTGTCTTAACAGCAGTATCGATAAGACCTTCACGACCACCC 82220 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || ||||||||||| | ||||| Sbjct 82221 ATTGCATGGAAGAAAAACTCTT 82242 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| | | ||| |||||||| || || || |||||| || ||||| || || Sbjct 81362 AATTTCCTTTAAACGAGGAACACCGGAAGTGACTTT---CTTGGAAGCCACACCGGCGAA 81418 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||||||||| || | ||| |||| ||||||||| || ||| || |||| | Sbjct 81419 ATGGAAAGTATTCAGTGTCATTTGTGTAGCTGGCTCACCGATGGATTGAGCTGCAAGAAC 81478 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| || || Sbjct 81479 ACCAACCATTTCACCAGG 81496 >seq190 Length=622597 Score = 93.3 bits (102), Expect = 1e-13 Identities = 301/461 (65%), Gaps = 10/461 (2%) Strand=Plus/Plus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 |||| |||| | |||||||| || |||||||||||||||||||||||||||| | | Sbjct 167018 TTAAGAATGAAGCGGCACCGTGTGCGATCATACAATCACGTTCCATTTCACCAAATCTTA 167077 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCT 233378 |||||| || |||| ||||| | || | ||| | |||||||| ||||||| Sbjct 167078 AACCACCGTCTCTTGATCTACCTTCCACCGGTTGTCTTGTTAAAACTTGCATTGGACCAC 167137 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGAC 233438 | || | || ||| || || | |||||||| | | | ||||| |||| Sbjct 167138 GGGCTCTGGCATGAATCTTGTCATCCACCATATGTCTTAAACGTTGGTAATATGTAGGAC 167197 Query 233439 CAATAAATAGTTCTGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTAC 233498 ||| || | || || ||||| || || | | ||| |||| | ||||||| | Sbjct 167198 CAAAGAAGATTTGAGCCATTAATTTTTTACCTGTGTGACCATTGTACATAACTTCAAACC 167257 Query 233499 C-CGATGAATTGTAACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACCT 233557 | ||| || | ||||||| || ||||| | | ||||| | || | Sbjct 167258 CACGA-GATTGGTAACCATGTTCACGTAATA-ATTTAGATATACCCTCTACTGT-----A 167310 Query 233558 TTATTAGCAAACGCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCATT 233617 | | | ||| | || | |||||| |||| | ||| | | |||| || | Sbjct 167311 ATGTCTGTAAATGGAGAAGCATCACCTTCGTTACCAGATAATGCAGCCACCTTACTCAAT 167370 Query 233618 AAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATT 233677 ||| ||| || || || | | |||||| | | ||| | ||| || |||||||||||| Sbjct 167371 AAACATTCGATTAAATGCGCCACAGTCATACGAGATGGAATAGCATGAGGATTGATAATT 167430 Query 233678 AAATCTGG-ACGTACTCCCTCCGATGTAAAAGGCATATCTT 233717 |||||||| ||| | || || | |||||| |||||||||| Sbjct 167431 AAATCTGGTACG-ATACCTTCTGCTGTAAATGGCATATCTT 167470 Score = 91.5 bits (100), Expect = 4e-13 Identities = 370/571 (65%), Gaps = 14/571 (2%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| | ||| || ||| ||||||| ||||| || || | |||| ||| || Sbjct 166971 ACAAATATGAACTCTGAAAGCATCGGATGCTTCCATTAATCTTTCCTTTAAGAATGAAGC 167030 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||||| |||||||||||||| ||||||||||| || | | |||||| || | Sbjct 167031 GGCACCGTGTGCGATCATACAATCACGTTCCATTTCACCAAATCTTAAACCACCGTCTCT 167090 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | ||||| || | || || | || | | ||| ||||| || | | ||| Sbjct 167091 TGATCTACCTTCCACCGGTTGTCTTGTTAAAACTTGCATTGGACCACGGGCTCTGGCATG 167150 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663 ||| |||| |||||||| | | ||| ||||| ||| ||||| | |||||| | Sbjct 167151 AATCTTGTCATCCACCATATGTCTTAAACGTTGGTAATATGTAGGACCAAAGAAGAT--T 167208 Query 251664 CGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC 251720 || | |||| | | || || || | || ||||||||||| ||| ||||| Sbjct 167209 TGA-GCCATTAATTTTTTACCTGTGTGACCATTGTACATAACTTCAAACCCACGAGATTG 167267 Query 251721 ATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGT 251780 |||||| ||| ||| | || ||| | | | || ||| | || || ||| Sbjct 167268 GTAACCATGTTCACGTAATAATTTAGATATACCCTCTA-CTGTAATGT-CTGTAAATGGA 167325 Query 251781 GCCG--TCTCCGTAAAGACCCATTTGAATCAAC-ACTTTGCCTAAAAGTGTCTCTTTCAG 251837 | | || || | ||| | | | || | || || | || | || | | Sbjct 167326 GAAGCATCACCTTCGTTACC-AGATAATGCAGCCACCTTACTCAATAAACATTCGATTAA 167384 Query 251838 TTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAG 251897 || || | |||||||||| ||||||||||| |||||||| || | || ||| | Sbjct 167385 ATGCGCCACAGTCATACGAGATGGAATAGCATGAGGATTGATAATTAAATCTGGTACGAT 167444 Query 251898 TCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTT 251956 || || || || || ||||||| ||| || | ||| || | |||||||| ||||||| Sbjct 167445 ACCTTCTGCTGTAAATGGCATAT-CTTCTCTACGATATGTGATACCAATAGTACCCTTTT 167503 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || ||||||||| ||| || ||||| || Sbjct 167504 GACCATGACGAGAAGCGAATTTGTCACCGAT 167534 Score = 91.5 bits (100), Expect = 4e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | |||||| | |||||| | |||||||||||| | | |||||||||||| | Sbjct 273599 GCACCATAAGCAATGACACAATCTCTTTCCATTTCACCTAATCTCAGACCACCATCTCTA 273658 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 |||||||| | | |||||| || || || | ||| ||||| |||| | | Sbjct 273659 GACCTACCTTCAGTAGGTTGACGCGTCAAGACCGCTCTAGGACCACGAGCTCTTGCGTGC 273718 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCT 233452 || |||||| ||||||||||||| | | ||||||| || |||| ||| | | | Sbjct 273719 ATCTTATCTAAGACCATATGCTTCAATTTTTGATAATAAATTGGCCCAAAAAAGATATAT 273778 Query 233453 GCGTGTAA 233460 || ||||| Sbjct 273779 GCTTGTAA 273786 >seq301 Length=626894 Score = 89.7 bits (98), Expect = 2e-12 Identities = 247/378 (65%), Gaps = 3/378 (1%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||| | | ||| ||| || | || |||| || || || | Sbjct 433230 CCTATCAAATCTACCGGGTCTTAATAAGGCTTTATCAAGGATGTCGGGCCTATTAGTACC 433289 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 ||||| ||||||| | || | | | |||| |||||||| || |||||||| Sbjct 433290 AGCCAAGACAACAACATGATCAGCTGGAGTAAAACCATCCATTTCCACCAACATTTGATT 433349 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 | ||| | ||| ||||||||||| | |||| ||| ||| | || ||| Sbjct 433350 CAATGTGTTTTCTCTTTCATCATTAGCACCTGAAAAATTACC---TTTTTGTCTAGCTTT 433406 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | |||||||||||||||||| || | | | |||| |||| || ||| || Sbjct 433407 CCCGATAGCATCAATTTCGTCAATAAACACAATCGAAGGAGCGTTTTCCCTTGCAGTTTT 433466 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || |||||||| | | || || | ||| ||| ||||||| ||||| || ||| | Sbjct 433467 GAACAAATCTCTTACCCTTGCAGCACCGACACCTACAAACATTTCAACAAACTCTGAACC 433526 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||| || | ||||| || || || || || ||| |||| || | || || Sbjct 433527 GGAAACAAAATAGAATGGGACGCCGGCCTCACCGGCGGTAGCCTTCGCAAGCAAGGTTTT 433586 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| || || ||||| || Sbjct 433587 ACCGGTACCTGGTGGACC 433604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809170624639