Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07] 447 sequences; 12,513,392 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq224 161 1e-34 seq201 129 7e-25 seq57 123 3e-23 seq235 113 5e-20 seq35 95.1 1e-14 >seq224 Length=1007144 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || |||||||| ||| | ||||| || || | Sbjct 62281 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 62222 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| ||| || ||||||||||| || ||||| ||||||||| Sbjct 62221 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCACCAGACCAG 62162 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||| ||||| ||||||| | || || ||||||| || Sbjct 62161 CAGAGATTGATTTTCGCTGGTAAACAACTGGAGGATGGAAGAACTCTGTCAGACTACAAC 62102 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || ||||||||||| |||||||| | || | ||||| Sbjct 62101 ATTCAAAAAGAGTCCACTCTTCACTTAGTCTTGAGACTAAGAGGTGG 62055 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || || |||||||||||| | ||||| || || | Sbjct 62965 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 62906 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 62905 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 62846 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||| ||||| || || | | | || || | || || || Sbjct 62845 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTGTCGGATTACAAC 62786 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | |||||||||||||||||||| Sbjct 62785 ATTCAAAAGGAATCCACTCTTCA 62763 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| ||||| ||||| || Sbjct 461337 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCA 461396 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| |||| ||||| |||||||| || ||||| || ||||| Sbjct 461397 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAA 461456 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | || || | | || | | ||||| || Sbjct 461457 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTACAAC 461516 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| |||||| | || | |||||| Sbjct 461517 ATCCAAAAGGAGTCCACTTTACACTTGGTCTTG 461549 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || || || || |||||||| ||| | ||||| || || | Sbjct 62737 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 62678 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||| ||| || ||||||||||| || |||||||||||||| Sbjct 62677 GACACCATAGACAATGTGAAGAGTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAA 62618 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | |||||||| ||||| || | || |||| | | || || | || || || Sbjct 62617 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACGCTGTCGGATTACAAC 62558 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | ||||||||||| || ||||| Sbjct 62557 ATTCAAAAGGAATCTACCCTTCA 62535 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || || ||||| ||||| || || | |||||||| | | Sbjct 62509 ATGCAGATTTTTGTCAAAACTCTGACCGGTAAGACCATAACCTTGGAGGTTGAATATTCT 62450 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| |||| || ||||||||||| || |||||||| ||||| Sbjct 62449 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 62390 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||| ||||| || || | | | || ||| | || || || Sbjct 62389 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 62330 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | ||||| || ||||||||||| Sbjct 62329 ATTCAAAAAGAGTCCACTCTTCA 62307 >seq201 Length=186330 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 |||||||| || | || || ||||| || ||| | || ||||| || ||| | ||| Sbjct 46823 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 46882 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || ||||| |||||||| || || ||||| ||||| || | || Sbjct 46883 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 46942 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||||||||||||| | || || | | | ||| | | ||||| || |||||||| Sbjct 46943 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 47002 Query 27595 GAATCCACTCTTCATCTAGTCTTG 27618 ||||||||| | ||| |||||||| Sbjct 47003 GAATCCACTTTACATTTAGTCTTG 47026 >seq57 Length=156688 Score = 123 bits (136), Expect = 3e-23 Identities = 288/432 (67%), Gaps = 17/432 (4%) Strand=Plus/Minus Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC---- 81368 |||| |||||| | |||||| |||||||||||||||| | | ||| | | || Sbjct 58682 TCGACAAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGT 58623 Query 81369 --CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 |||| || |||| |||| |||||||| ||||| ||| || ||||| | ||| Sbjct 58622 CTCTTGTTAC---CACCTTGGTCCACGTAACGTGCAGTGTTGTTGAAGACACGGATCATG 58566 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486 || || | || | ||| |||||| ||||| | ||| || || ||| || | Sbjct 58565 GGAATCAACCCGTTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATA 58506 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATG 81546 ||| |||| |||||| | ||||||| ||| |||||| |||||| |||| Sbjct 58505 TTGTTGATATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAA 58446 Query 81547 GTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATC 81606 || || ||||| || || ||| || | |||||| ||| || |||||| ||||| Sbjct 58445 GTGTCGTAAATACCTTCAATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATT 58386 Query 81607 TGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTT 81666 ||||| | | |||||||| || ||||| |||| ||||| |||| || | Sbjct 58385 TGAGGATGTGGCGTACCGGCATTAAATAGTGTGGGGGAAGCGTGGGTGAAGTATCTCAAC 58326 Query 81667 GACATCAGGTCATAGGTTTCCTTGACGCGTGGA----ATATCGTCACCGTGAATACCGAT 81722 ||||||| || || || ||| | || ||| |||||| ||||||||||| | Sbjct 58325 GACATCAAGTTGTAAGT---CTTCA-GCACGGACTCGATATCGCTGCCGTGAATACCTAG 58270 Query 81723 AGCTACACGCAT 81734 || |||||||| Sbjct 58269 GGCCACACGCAT 58258 >seq235 Length=640350 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| | || || ||||| || ||||| || ||||| || ||| | ||| Sbjct 599350 CTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCAT 599291 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | || | || ||||| ||||| || || || || || ||||| || | | Sbjct 599290 TGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATT 599231 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||||||| | || || | | | ||| | | ||||| || | ||||| Sbjct 599230 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAA 599171 Query 27594 GGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| | ||| |||||||| Sbjct 599170 GGAATCCACTTTACATTTAGTCTTG 599146 >seq35 Length=195003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 277/419 (66%), Gaps = 21/419 (5%) Strand=Plus/Minus Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC----- 81366 |||| ||||| | ||| || || ||||||||||||| ||| | || | | || Sbjct 50715 TCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGT 50656 Query 81367 CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 | |||| | |||||||||| || ||||||||||| ||| || ||||| | |||| Sbjct 50655 CTCTTGTTA---CCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATA 50599 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486 || || | || | || ||||||||||| | || || || | || || | Sbjct 50598 GGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATG 50539 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGGTTCA 81544 ||| || ||||| || ||||| | || ||| |||||| |||||| |||| Sbjct 50538 TTGTGAATATGTAGACCAATACCACC--AGCAGTTTTGGAAATCAAAGCACATTCCTTCA 50481 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || || || || || || ||| ||| | ||||| ||| | ||||||| |||| Sbjct 50480 AAGTGTCGTAGATACCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACA 50421 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 | ||||| || || || || ||||| | ||||| | |||||| | || || | Sbjct 50420 TTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTA---TT 50364 Query 81665 TT---GACATCAGGTCATAGGTTTCCTTGA-CGCGTGGAATATCGTCACCGTGAATACC 81719 || ||||||| || |||||||| || || || ||| | |||||||||||||| Sbjct 50363 TTAGGGACATCAAGTTATAGGTTT-CTAGAGCGGCCTCAATGTTATCACCGTGAATACC 50306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570307213390640