Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242675.1_202017-08-07]
447 sequences; 12,513,392 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq235 132 3e-26
seq201 125 5e-24
seq224 98.7 7e-16
>seq235
Length=640350
Score = 132 bits (146), Expect = 3e-26
Identities = 166/224 (74%), Gaps = 3/224 (1%)
Strand=Plus/Minus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
|||||||| || | || || || || |||||||| |||||||| || | ||||| ||
Sbjct 599349 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 599290
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | ||| | || | || |||||||||||| | || || || ||||| | ||
Sbjct 599289 GACAATGTCAAATCCAAGA-TTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATT 599231
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| ||||| || || ||| ||||||||| | || || ||| |||||||| |||||
Sbjct 599230 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAA 599171
Query 23799 AGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
|| ||||| ||||||||||| || || ||| |||| || ||||
Sbjct 599170 GGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTATCA 599127
>seq201
Length=186330
Score = 125 bits (138), Expect = 5e-24
Identities = 165/225 (73%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678
||| || ||||| | || || || || |||||| | |||||||| || | |||||| |
Sbjct 46822 TTTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 46881
Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737
||| ||| | || |||| | || ||||| |||||| | || || || ||||| | |
Sbjct 46882 TGACAATGTCAAGTCAAAGA-TTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGAT 46940
Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797
|||| ||||| || || ||| ||||||||| | || || || |||||||| ||||
Sbjct 46941 TAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAA 47000
Query 23798 AAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
| || ||||| ||||||||||| || || ||| |||| || ||||
Sbjct 47001 AGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTATCA 47045
>seq224
Length=1007144
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || ||||| || || || || || || || | || ||||| | |
Sbjct 62509 ATGCAGATTTTTGTCAAAACTCTGACCGGTAAGACCATAACCTTGGAGGTTGAATATTCT 62450
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | | || || || ||||| |||||| | || || || |||
Sbjct 62449 GACACCATCGATAACGTCAAGTCTAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAA 62390
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || || || || |||||||||||||||| | || || |||||||||
Sbjct 62389 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 62330
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| |||||||||||||| | || || || ||||| | |||| ||
Sbjct 62329 ATTCAAAAAGAGTCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 62283
Score = 95.1 bits (104), Expect = 8e-15
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || ||||| | || || || || |||||| | || || || || |
Sbjct 62281 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAGACTATCACTTTAGAGGTCGAATCTTCT 62222
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| |||||| | || ||||| ||
Sbjct 62221 GACACCATAGACAATGTGAAGAGTAAGA-TCCAGGACAAGGAAGGTATTCCACCAGACCA 62163
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || || || ||||||||||| || | | | ||| | || |||||
Sbjct 62162 GCAGAGATTGATTTTCGCTGGTAAACAACTGGAGGATGGAAGAACTCTGTCAGACTACAA 62103
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||| |||||||||||||| | || ||||| || ||
Sbjct 62102 CATTCAAAAAGAGTCCACTCTTCACTTAGTCTTGAG 62067
Score = 86.0 bits (94), Expect = 4e-12
Identities = 154/220 (70%), Gaps = 10/220 (5%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || ||||| || || || || || |||||| | || || || || |
Sbjct 62737 ATGCAGATTTTTGTCAAAACTCTAACTGGTAAGACTATCACTTTGGAGGTCGAATCTTCT 62678
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| |||||| | || ||||| ||
Sbjct 62677 GACACCATAGACAATGTGAAGA-GTAAGATCCAGGACAAGGAAGGTATTCCTCCAGACCA 62619
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATT 23785
|||| | || || ||||| || ||||| ||||||| ||||| || | | ||||
Sbjct 62618 ACAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTAGAACG--CTGTCG--GATT 62563
Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||||| ||||| || || || | || || || ||||
Sbjct 62562 ACAACATTCAAAAGGAATCTACCCTTCACTTGGTCCTAAG 62523
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || || || || || || || || ||| | || || || || |
Sbjct 62965 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 62906
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| | || | | || ||||| ||||| ||||| | || || || |||
Sbjct 62905 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 62846
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATTA 23786
||| | || || || || || |||||||||||||||| ||||| | | || ||||
Sbjct 62845 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGC--TGTCGG--ATTA 62790
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||||| ||||| || ||||| | || || || ||||| | |||| ||
Sbjct 62789 CAACATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 62739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007758587076
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |