Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq27 201 1e-46 seq5 194 1e-44 seq4 190 2e-43 seq17 129 5e-25 seq26 91.5 1e-13 seq19 87.8 2e-12 seq13 87.8 2e-12 >seq27 Length=203299 Score = 201 bits (222), Expect = 1e-46 Identities = 420/617 (68%), Gaps = 8/617 (1%) Strand=Plus/Plus Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 ||| | || || |||||||| ||||| ||||| || ||||| || |||||||| | || Sbjct 141274 GTGCTTGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAAAACTTGGTCGAGAACTTC 141333 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || || || || | ||||||| | | || ||||| || || | || || || Sbjct 141334 TCCACCGAGGTCCAGATCCCGGAGGCCAAGAGTTTCTACGGGTTCCAGATCGCAATCGAG 141393 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||| | || || |||| || || | | ||||| || ||| | |||||| | | || Sbjct 141394 AACATCCACTCCGAAACCTACTCCTTGTTGATCGACACCTACATCAAGGACCCCAAGGA- 141452 Query 57870 AAACGTAGACT-GTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928 || || || ||||||||| ||||| || || || | ||| | ||||||| || || Sbjct 141453 AAGCGAGTTCTTGTTCAACGCCATCGACACCATCCCAGAAATCTGCGAGAAGGCCGAATG 141512 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGC 57988 | | | | |||||| | |||| ||| ||||| || || || |||||||||| Sbjct 141513 GGCCCTTAGATGGATCCAGGACGCCGATGCCCTGTTCGGTGAAAGACTGGTCGCGTTCGC 141572 Query 57989 CGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACG 58048 | || |||||||| | |||||||| || ||| || | || || ||| |||||||| | Sbjct 141573 CTCCATCGAAGGTGTCTTCTTTTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAG 141632 Query 58049 CGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCA 58108 || |||||||||| |||| || |||||| |||| | | ||||| ||| | || Sbjct 141633 AGGTATGATGCCCGGTTTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCA 141692 Query 58109 TACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC-GACGC-GGGATCGC 58166 || || ||||| || | ||| | | ||| | || || || ||| | | |||| Sbjct 141693 CACCGACTTTGCCTGTTTGTTGTTCGCCCACTTGAAAAACAAGCCGGACCCAGCCATCG- 141751 Query 58167 ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCT 58225 || | | || |||||||||| |||| ||||||| || || | || || ||| | Sbjct 141752 -TCGAGAAAATCGTCACCGAGGCCGTCGAGATCGAACAAAGA-TACTTCCTAGACGCCTT 141809 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 || || ||| |||| ||||||||| || |||||| | ||| | ||||| || || Sbjct 141810 GCCAGTCGCCTTGCTAGGTATGAACGCCGACTTGATGAACCAATACGTCGAGTTCGTCGC 141869 Query 58286 CGACAGACTTTTGCTCG 58302 |||||||||||| ||| Sbjct 141870 AGACAGACTTTTGGTCG 141886 >seq5 Length=350035 Score = 194 bits (214), Expect = 1e-44 Identities = 430/640 (67%), Gaps = 4/640 (1%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || |||| |||||||| || |||||||| || ||||| || | || || Sbjct 95674 TTCGACACGCTTCATGAAAAGATCAGGAATCCATAGGGCAGGGAACAAATCTCTTGCACG 95615 Query 23401 CACCTCCTCTTTGCCG-GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | || || || || | ||| ||| | | ||| | |||||| || | ||| ||||||| Sbjct 95614 AATTTCTTCCTTACCATGAGTT-TTTCTGATATCAACAAAGTCGAAGATGTCTGCATGCC 95556 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAAC 23519 | ||||| | | ||| |||||| || || |||||||| || || || || || ||||||| Sbjct 95555 ATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTAAC 95496 Query 23520 GGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC 23579 | || ||||| ||| | || | | ||| || | | || || || | ||| | Sbjct 95495 GTGCAGTGTTATTGAATACACGGATCATGGGAATCAACCCATTTGAAGTACCGTTGGTAC 95436 Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639 | || | | || ||| | | |||| |||| | || | ||| | || || | | Sbjct 95435 CTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCACCTGCAG 95376 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 || || ||||| || || | ||||| ||||||||| || || |||||| ||| || | Sbjct 95375 TCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGTCGTCCT 95316 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | || | || |||||| ||||||||||| | | |||||| |||| || || | Sbjct 95315 TCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAAATAGAG 95256 Query 23760 TCGGGCTGGCGTGCGTAAAGTATC-CATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 | ||| ||||| || ||||||| || | ||||| | ||||| || | | ||| Sbjct 95255 TGGGGGAAGCGTGAGTGAAGTATCTCAAT-GACATCAAGTTGTAAGTCTTCAGCACGGAC 95197 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG 23878 || ||||| ||||| ||||| | ||| || ||||| | || | ||| || | ||| Sbjct 95196 TCGATGTCGCTACCGTGGATACCCAGGGCCACACGCATGACCAGATGTTGGGGACGTTCG 95137 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 || |||||| | | | | || || ||||||| || || || || || |||||| Sbjct 95136 GCCACTTCGCCGTCTAGTCTTAGCAAGTAGGAACGTTCCAAAGTCTTGAACCCGAAATAG 95077 Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || || || || | |||| ||| |||||||| |||| Sbjct 95076 GTGTACTTGAAATCTCTGTCGTACACGATGGCCGAGTTCA 95037 >seq4 Length=66942 Score = 190 bits (210), Expect = 2e-43 Identities = 454/681 (67%), Gaps = 14/681 (2%) Strand=Plus/Minus Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGG---CGATTGCATCGGACACATG 23320 || ||||||||| ||||||| ||||| | ||| || |||| | ||| | | Sbjct 59928 GCTTCAAATTCGTCACCGTAGCAGTCACTTAAGCCTGGAGCCGATG---TAGGAGAGAAT 59872 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 | | |||| | || | ||| || || |||| |||||||| || | ||||||||| Sbjct 59871 AAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACCCATAGAGCT 59812 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||| | || | || || | || || || ||| |||||| | | || | ||| Sbjct 59811 GGGAATAAATCTCTCGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATGAAG 59752 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | || || ||||| ||||| | || | ||||| || || |||||||| || Sbjct 59751 TCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGTCTCTTGTTA 59692 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || ||||| || || |||||||| ||||||||| | || | | ||| || | | ||| Sbjct 59691 CCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCG 59632 Query 23561 TTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 || || | ||| | || || || | || || |||| |||| |||||||| | Sbjct 59631 TTAGAAGTCCCG--TTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATAT 59574 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | | ||| || || || | | ||| || |||| || |||| |||| ||||||||||| Sbjct 59573 GTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGA 59514 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||| || ||| || || || | || || | |||||| || |||||||| | || | Sbjct 59513 TGCCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTG 59454 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | ||| | || ||| | || || |||||| ||||||||| ||||| | | Sbjct 59453 GTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGT 59394 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCA 23858 | || || || | ||||| ||||||| || ||||| ||||| | |||||| | ||| | Sbjct 59393 TATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATGA 59334 Query 23859 TCATGTATTGAGGTC--TCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 | | || ||| || | || | | ||| ||||| | | | || | || ||||||| Sbjct 59333 TTAAGTGTTGTGGACGTTCAGCAACTTGA--CCGTTGACTCTCAATAAGTACGAACGTTC 59276 Query 23917 CATCGTTTTAAATCCAAAATA 23937 | |||||||| || || || Sbjct 59275 TAAAGTTTTAAAACCGAAGTA 59255 >seq17 Length=149906 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| || || || || || | || || ||| | || Sbjct 122944 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 122885 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| | ||| ||||||||||||| | || || ||||| Sbjct 122884 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 122825 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| |||||||| || || | ||||| ||| Sbjct 122824 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 122765 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| |||||||| |||| || || || || || |||| Sbjct 122764 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGGTA 122716 >seq26 Length=324517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| |||||| |||| || || || ||||| | || |||||| | || |||| | Sbjct 286083 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 286024 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | |||||| | || ||||| ||||| | || || ||||| || | | Sbjct 286023 GACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTG 285964 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || || ||||| || || ||||||||| || || || ||| || ||||||||||| Sbjct 285963 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAAG 285904 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||| | ||| | || | ||| |||| || |||| Sbjct 285903 GAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTA 285864 >seq19 Length=306686 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 8665 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCT 8724 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | || | ||||| | || ||||||||||| | || || ||| Sbjct 8725 TCAGACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGAC 8784 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || ||||||||| | ||| || || || Sbjct 8785 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTAC 8844 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| || || ||| | || |||| | ||| |||| || ||| Sbjct 8845 AACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGGT 8895 >seq13 Length=204060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || || ||| |||| || || || ||||| | || |||||| | || |||| | | Sbjct 46708 TTTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 46767 Query 31261 CGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 || | ||||| || ||| | | |||||||||| | || || ||||| || | Sbjct 46768 TGACAATGTCAAGTCAAAGATTCAAG-ACAAGGAAGGTATCCCTCCTGACCAACAAAGAT 46826 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 |||| || ||||| || || ||||||||| || || || || || ||||| |||| Sbjct 46827 TAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAA 46886 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| ||| | ||| | || | ||| |||| || |||| Sbjct 46887 AGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTA 46928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766099107680