Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq5 132 5e-26 >seq4 Length=66942 Score = 170 bits (188), Expect = 2e-37 Identities = 520/791 (66%), Gaps = 21/791 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| || |||| |||| | || || | || |||||||| ||||||||| || || Sbjct 61092 TCAATGGTAAATTGAATAGCAGCAGAAGCGGCTTGTGTTCTCAAATAATACATACCGGTC 61033 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| || |||| ||||| ||||||||||| || || || | || || | Sbjct 61032 TTTAGACCTTTCTTCCAACCGTAGAAATGCATACTTGTTAGCTTACCCATGGTTGGGGCA 60973 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTAT--AAACGCACCTCTGTCGGCTGCCA 36967 | ||| ||| || || |||||| || ||||| | | ||||||||||| Sbjct 60972 CGCAAGAATAAATTCAAAGAATGGGATTGATCGATGTAAACGG--CACGGTCGGCTGCCA 60915 Query 36968 TTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 | | | ||| ||||| || || |||||||| || ||||| | | ||| | | | Sbjct 60914 TGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTATACAAATCTTTCAATTCTT 60855 Query 37028 CTGGTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATT-CTTTATG 37083 ||||| | | ||| |||||| |||||||| ||| | | |||| ||| || Sbjct 60854 GTGGTACGTTTGGTAAACCTTGAATGGAACCATTTTGTGTGATTAGA-TATTGCTTCATA 60796 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 ||| || ||| ||| | | | || | || || || |||||| || || ||| Sbjct 60795 CCATCATCCCAAATACCCAAATCAACCAAATCACGCAGTAAGTATGGATTGACGACTTGA 60736 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || ||||||| || | | | || || ||| |||| |||||| | |||| Sbjct 60735 AATTCACCAGATAGAACACGACGAGAGTACATGTTGGAAGTAACTGGTTCGAAACACTCG 60676 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTAT 37261 || | || ||| || || || || |||||||||||||| ||||| || | ||| | Sbjct 60675 TTGTAACCTAAAATCTGGGAAGTGGATGCAGTAGGCATAGGTGCCATGGTCAAAGAGT-- 60618 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTT---AGTTCATTCCAATCCCATAAATCTG 37318 |||| | ||||| | | || || ||| | ||| || ||||||||| | | | | Sbjct 60617 TTCTAACACCATGCTTCATGATG-TCATTTCTCAAAGT--ATCCCAATCCCACATACC-G 60562 Query 37319 TTGGGTTCTTTAACC-ACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTA 37377 | |||| || || |||| || |||| || ||||||| | |||||||| | | Sbjct 60561 TAAGGTTTTTCGTCCCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGG 60502 Query 37378 TATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAA 37437 | || || || || || | ||| |||||| || ||| | ||| | | |||| Sbjct 60501 AAGGTTTCGTATGGGCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGG 60442 Query 37438 TATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAG 37497 || || ||||| || ||||||||||||| || |||||||||| ||||||| | Sbjct 60441 TACATGGTTTCAAAGATTTGTATATTTAGTAAGCGTGCTTCTTCGGAGTCGAATGGTAAA 60382 Query 37498 CCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTC 37557 | ||| || || || ||||||||||| || ||||| | | | || || || ||| || Sbjct 60381 CGCAACAACATGAAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTC 60322 Query 37558 TTATTAGATCT 37568 |||||||||| Sbjct 60321 ATATTAGATCT 60311 Score = 165 bits (182), Expect = 8e-36 Identities = 413/625 (66%), Gaps = 2/625 (0%) Strand=Plus/Minus Query 38010 TTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGT 38069 || ||| || || | ||| || | ||| || ||||||| || | ||||||||| | | Sbjct 59854 TTCTTCGACACGCTTCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGC 59795 Query 38070 TCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTG 38129 | |||||| || || ||||||||| | | | || ||||| ||||||||||| Sbjct 59794 ACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTG 59735 Query 38130 CCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATA 38189 |||||| || | ||| | | | || || ||||| || | ||| ||||| | || ||| Sbjct 59734 CCATGGCTCCAAATATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATA 59675 Query 38190 TCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTAT 38249 | | ||||| || | | | | |||||| | || || ||||| | ||||| | Sbjct 59674 ACGGGCAGTGTTGTTGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGT 59615 Query 38250 ACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGC 38309 ||| | || |||| || | || || || || || | || || ||||| || Sbjct 59614 ACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGC 59555 Query 38310 ATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATC 38369 | ||| || || ||||| |||| || || || || | || ||||| || ||||| Sbjct 59554 AGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAGATGCCTTCAATGGAATCATC 59495 Query 38370 CTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAA 38429 ||| |||| | || ||||| |||||||||||| ||| || || ||||| ||||| Sbjct 59494 CTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAA 59435 Query 38430 TGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATC 38489 || ||||| || || | || ||||| |||| | ||||| ||||||| | | Sbjct 59434 AGTTGGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGC 59375 Query 38490 ATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || || | | | ||||||||||||| | || ||||| | | |||||||| | ||| Sbjct 59374 CTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTC 59315 Query 38550 TATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 | || | || | | | || ||||| |||||| ||||| | || || || Sbjct 59314 AGCAACTTGACCGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTA 59255 Query 38610 ACTATA-TGAATAATCTCTATCGTA 38633 ||| || |||| ||||||| || || Sbjct 59254 ACTGTACTGAA-AATCTCTGTCATA 59231 >seq5 Length=350035 Score = 132 bits (146), Expect = 5e-26 Identities = 520/802 (65%), Gaps = 37/802 (5%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 || || | || |||||||| || ||||| ||||| ||||| ||| |||| ||||| Sbjct 96891 GAAGCAGCTTGTGTTCTCAAGTAGTACATACCAGTCTTTAGACCCTTCTTCCAACCGTAG 96832 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTA---GGATTATCTATATATATTGTCATTGAT 36930 ||||||||||| || | |||| | || | ||||| | | | ||| || || Sbjct 96831 AAATGCATACTTGTAA-TTTTACCCATTGATGGGGATTGTAGGAAAAGATT--CAAGGAG 96775 Query 36931 TGACTTTGATCTAT--AAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAG 36988 || |||||| || ||| | | | | | || ||||| | | ||| ||||||| Sbjct 96774 TGGGATTGATCAATGTAAATGGAACGAT--CAGCAGCCATGTTGATAATGGTCTTTTGAG 96717 Query 36989 ATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTT 37045 | || |||||||| |||||||||| | ||| | | | || | | | || | || Sbjct 96716 AGATTTCCCAAACAGTTTTATATAGATCTTTCAAGTCTTGAGGAACGTTTGGTAAGTCTT 96657 Query 37046 GAATAGAACCATTATG--TAACACAATTGTATTCTTT-ATGTCATTATTCCACATATTTC 37102 ||| |||||||| || ||| ||| ||| ||| || || || ||| ||| | Sbjct 96656 TAATGGAACCATTTTGAGTAATCAAAT---ATTGTTTCATACTATCATCCCAAATAC--C 96602 Query 37103 TACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATAC 37160 | | | | || | | || || |||||| || || || || || |||||||| || Sbjct 96601 CAGGTCGACCAAATCACGTAGTAAGTATGGATTGACGACTTGGAATTCACCAGATAAGAC 96542 Query 37161 TCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTG 37220 | | | || || || ||| |||||| | | ||||| | | | ||||| Sbjct 96541 ACGACGAGAGTACATGTTTGAAGTGACTGGTTCGAAACATTCATTGTACCCAAGAATTTG 96482 Query 37221 AGATGTAGATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGTA 37278 |||||||| || || |||||||| || || | ||| | |||| || |||||| | Sbjct 96481 GGATGTAGAAGCGGTTGGCATTGGGGCCATGGTTAAAGAGT--TTCTTAACCCATGTTTG 96424 Query 37279 TTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACA 37336 ||| ||| |||| | ||||||||| | | | ||| || | || ||||| Sbjct 96423 ACAATGTCCTTCTTTAAAGTGTCCCAATCCCACATACCAAATGGCTTAGCATT--CCACA 96366 Query 37337 TATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGT 37396 | || |||||| |||||| ||| || ||||| | | | | || ||| || | Sbjct 96365 TGTCGAATTGTAAAATACCCTTAGAGGCAGGAGAGCCTTCAAAAGTGGAATATTTACCTT 96306 Query 37397 AAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTT 37456 ||| ||||| ||| ||| || ||| || | ||||| || || ||||||||||||| Sbjct 96305 CCTTTTGAGCTAATTCACAAGAAGCTTCAAGGGTGGCATGGTAAATAGTTTCGAAAATTT 96246 Query 37457 GTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACAT 37516 | |||| | ||||| |||| ||| | || |||| | | || | ||| | || Sbjct 96245 GCTTATTAAGTATTTGAGCTTTTTCACATTCAAATGGTAAACGCAGCATCATATAGGTAT 96186 Query 37517 CAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA---TCTAGACG 37573 | |||||||| ||||| || | | || ||||| ||| || ||||||| ||||| | Sbjct 96185 CGGCCAAACCTTGAACCCCCAGGGCAATAGGTCTGTGTCTCATATTAGAGTTTCTAGCC- 96127 Query 37574 ATTCTATCACTGGATAATAATT 37595 ||| |||||||||||| || Sbjct 96126 --TCTGGCACTGGATAATAGTT 96107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 287/445 (64%), Gaps = 0/445 (0%) Strand=Plus/Minus Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065 |||| | ||| || || | ||| || | |||||| | ||||| |||| || |||||| Sbjct 95681 CATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGGGCAGGGAACAAATCTC 95622 Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | | | |||||| || || | | ||||| | | ||| ||||| || || | Sbjct 95621 TTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAACAAAGTCGAAGATGTCTG 95562 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 | |||||||| || | ||| | | || || ||||| || | ||| || || | | Sbjct 95561 CATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCA 95502 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 || | | |||||||| ||| | | ||| || | | ||||| || | |||| Sbjct 95501 CGTAACGTGCAGTGTTATTGAATACACGGATCATGGGAATCAACCCATTTGAAGTACCGT 95442 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCAC 38305 | |||| | ||||||| || | | || ||||| | || | || | |||| Sbjct 95441 TGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCAC 95382 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 ||||| || || || | || || | ||| || || || | |||||||| || || Sbjct 95381 CTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGT 95322 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | ||||| || | | | |||||| |||||||||||| ||| || ||||| |||| Sbjct 95321 CGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAA 95262 Query 38426 ATAATGTAGGAGATGCATGTATGAA 38450 ||| || || || || || |||| Sbjct 95261 ATAGAGTGGGGGAAGCGTGAGTGAA 95237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524483745760