Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17 172 1e-37 seq26 147 5e-30 seq13 147 5e-30 seq27 141 2e-28 seq19 134 3e-26 >seq17 Length=149906 Score = 172 bits (190), Expect = 1e-37 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || | || | || ||||| || ||||| || || || Sbjct 122715 ATACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCC 122774 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| |||||||||||||| |||||||| ||||| ||||| | ||||||||| || ||| Sbjct 122775 GATAGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGA 122834 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || | || || || || | ||||| || ||| Sbjct 122835 GGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCG 122894 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTA 104567 ||||| | ||||||||||||||||| ||||| || || || || ||||| ||| || Sbjct 122895 ACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCATAGTGTCTA 122952 >seq26 Length=324517 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || ||||| || ||||| Sbjct 285863 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG 285922 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 285923 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 285982 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || |||||||| | ||| ||||| || | ||| || || ||| Sbjct 285983 GGGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCA 286042 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || ||||| || || ||||||||||| Sbjct 286043 ACTTCTAGAGTGATGGTCTTACCAGT 286068 >seq13 Length=204060 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| || ||||| || || || || |||||| Sbjct 46929 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 46870 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| |||| || ||||| |||||| Sbjct 46869 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGA 46810 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 46809 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 46750 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | ||||| ||||| Sbjct 46749 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 46709 >seq27 Length=203299 Score = 141 bits (156), Expect = 2e-28 Identities = 291/428 (68%), Gaps = 21/428 (5%) Strand=Plus/Plus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || |||||||| |||||||| | || ||||| |||| ||||| ||||| || || Sbjct 141298 GACGGTATCGTCAACGAAAACTTGGTCGAGAACTTCTCCACCGAGGTCCAGATCCCGGAG 141357 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 |||| |||| ||||| |||||||| || || || || || || || || | ||| Sbjct 141358 GCCAAGAGTTTCTACGGGTTCCAGATCGCAATCGAGAACATCCACTCCGAAACCTACTCC 141417 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | || || || || || || | || ||| |||| || | | || ||| | | Sbjct 141418 TTGTTGATCGACACCTACATCAAGGACCCCAAGGAAAGC----GAGT-TCTTGTTCAACG 141472 Query 269057 AGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA 269107 | || || | | | || ||||| | |||||||| || | |||||| Sbjct 141473 CCATCGACACCATCCCAGAAATCTGCGAGAAGG----CCGAATGGGCCCTTAGATGGATC 141528 Query 269108 AACGATAGCGCG--CCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATA 269164 | || || ||| | ||| ||||| | || || || ||| | | |||||| | Sbjct 141529 CAGGACGCCGATGCCCTGTTCGGTGAAAGACTGGTCGCGTTCGCCTCCATCGAAGGTGTC 141588 Query 269165 TTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA 269224 |||||||| ||||| || ||| | ||||| ||||||||||||||||| | ||||| || Sbjct 141589 TTCTTTTCCGGGTCCTTCGCCTCCATCTTCTGGTTGAAGAAAAGAGGTATGATGCCCGGT 141648 Query 269225 TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || || ||||| |||||| |||| |||| ||||||||||| ||| |||||| || ||| Sbjct 141649 TTGACCTTCTCCAACGAACTGATCTGCAGAGACGAAGGTTTGCACACCGACTTTGCCTGT 141708 Query 269285 TTATTATT 269292 || || || Sbjct 141709 TTGTTGTT 141716 >seq19 Length=306686 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || || || || || || || |||||||| | |||||| |||||||| | ||| Sbjct 8870 TGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCCAATTGC 8811 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || |||||||| Sbjct 8810 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTA 8751 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| || || ||| || || || |||||||||||||| || Sbjct 8750 GACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTACCGGTT 8691 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 8690 AAAGTCTTGACGAAAATTTGCATCTTG 8664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397603376232