Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 seq19 113 4e-20 seq26 107 2e-18 seq17 100 3e-16 >seq13 Length=204060 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || || || ||||| ||||||||||| | ||| || || | Sbjct 46926 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 46867 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| || || || |||||||||||||||| || || ||||| Sbjct 46866 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGG 46807 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| |||| |||||| | | | |||||||| || || Sbjct 46806 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 46747 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || | |||||||| || ||||| | |||||| ||||| Sbjct 46746 TCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 46709 >seq19 Length=306686 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| |||||||| ||||| || |||||||| | ||| || || | Sbjct 8894 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 8835 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || |||| || || || ||||||| |||||||| || || || ||| Sbjct 8834 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8775 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| || | |||||| | | | ||||| | || || Sbjct 8774 ATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACT 8715 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || || | ||| || || || || ||||| Sbjct 8714 TCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 8668 >seq26 Length=324517 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || || || ||||| ||||||||||| | ||| || ||| | Sbjct 285866 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 285925 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| || || || ||||||| |||||||| || || || || Sbjct 285926 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 285985 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||||||||| | ||| || | ||||| | | | ||||||| || || Sbjct 285986 ATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACT 286045 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 || | |||||||| || ||||| | ||| || || ||| Sbjct 286046 TCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 286084 >seq17 Length=149906 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||| ||||||||||| | ||| |||| | |||| ||| | || | Sbjct 122736 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAAT--CCGATAGCGTTCTACCGTCTT 122793 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||| ||||| || | || || || || || || || |||||||| ||||| ||||| | Sbjct 122794 CCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATGCCTTCCTTGTCCT 122853 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| | ||||||| | ||| ||| |||| ||||| || | || || || | Sbjct 122854 GGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCGACCTCCAAAGTAATAGTCT 122913 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || || || || || || ||||| Sbjct 122914 TACCAGTCAGTGTCTTGACGAAAATTTGCAT 122944 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || || |||||||| | |||||||||||||| | ||| ||||| | Sbjct 121724 CCACCTCTTAGTCTCAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGAC 121783 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||| ||||| || |||| || ||||| || || ||||||||| Sbjct 121784 AGCGTTCTACCATCTTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGAGGA 121843 Query 94901 ATACCTTCTTTGTC 94914 |||||||| ||||| Sbjct 121844 ATACCTTCCTTGTC 121857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290897403440