Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 125 1e-24 seq34 120 5e-23 >seq2 Length=799714 Score = 125 bits (138), Expect = 1e-24 Identities = 192/271 (71%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | | ||| ||| |||||||||||||||| ||||| ||||||||||| Sbjct 245730 GCTAAGCGTCACAGAAAGAT-TCTAAGAGATAACATCCAAGGTATCACTAAGCCAGCTAT 245672 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | ||||| | | ||||| ||||||||| |||| || || |||| ||||| | Sbjct 245671 CAGAAGATTGGCTAGAAGAGGTGGTGTCAAGCGTATCTCCGGTTTAATCTACGAAGAAGT 245612 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||||| |||| | | | || ||| || || || || || || Sbjct 245611 CAGAGCTGTCTTGAAGTCCTTCTTGGAATCTGTCATCAGAGACTCTGTCACTTACACTGA 245552 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| || || | ||| | || || || ||||| | ||||| Sbjct 245551 GCACGCTAAGAGAAAGACTGTTACTTCTCTAGATGTTGTTTACGCTTTGAAGAGACAAGG 245492 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | | | || ||||| || |||||||| Sbjct 245491 TAGAACCTTATACGGTTTCGGTGGTTAATCT 245461 >seq34 Length=158503 Score = 120 bits (132), Expect = 5e-23 Identities = 189/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| | |||| ||| |||||||||||||||| ||||| ||||||||||| Sbjct 3010 GCTAAGCGTCACAGAAAGAT-TCTAAGAGATAACATCCAAGGTATCACTAAGCCAGCTAT 3068 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | ||||| | | ||||| ||||||||| |||| || || |||| ||||| | Sbjct 3069 CAGAAGATTGGCTAGAAGAGGTGGTGTCAAGCGTATCTCCGGTTTAATCTACGAAGAAGT 3128 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||||| |||| | | | || ||| || || || || || || Sbjct 3129 CAGAGCTGTCTTGAAGTCCTTCTTGGAATCTGTCATCAGAGACTCTGTCACTTACACTGA 3188 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| || || | ||| | || || || ||||| | ||||| Sbjct 3189 GCACGCTAAGAGAAAGACTGTTACTTCTCTAGATGTTGTTTACGCTTTGAAGAGACAAGG 3248 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| || ||||| Sbjct 3249 TAGAACCTTATACGGTTTCGGTGGTTAA 3276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075150627422