Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 167 6e-36 seq5 159 9e-34 >seq4 Length=66942 Score = 167 bits (184), Expect = 6e-36 Identities = 1030/1639 (63%), Gaps = 41/1639 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || |||||| | ||||| | | ||| ||||| || | || || || ||||| || Sbjct 59414 TTTACTCACGCCTCTCCAACTTTATTCAACGCTGGTACACCAAAGCCTCAAATGTCCTCC 59473 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||||||||| |||||||| || || |||| ||||| | ||| | Sbjct 59474 TGTTTCCTAGTTGCAATGAAGGATGATTCCATTGAAGGCATCTACGACACTTTGAAGGAA 59533 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| | |||||||| | ||| || || |||||| || || ||||| |||||||| Sbjct 59534 TGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATTCACAACATTCGTGCA 59593 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | ||||||| || || | |||| || || ||| | |||| ||| | || Sbjct 59594 ACCGGCTCTTACATTGCTGGTACGAACGGGACT-TCTAACGGGTTAATTCCTATGATCCG 59652 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| ||||| | || || ||||||||||| ||| | || || || Sbjct 59653 TGTCTTCAACAACACTGCCCGTTATGTTGACCAGGGTGGTAACAAGAGACCTGGTGCCTT 59712 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AA 363904 |||| | ||| | ||||| || || ||||| || || || | || | | || || Sbjct 59713 TGCTCTATATTTGGAGCCATGGCACGCTGATATCTTCGACTTCATCGACATTAGAAAGAA 59772 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||| || || || ||| | ||||| | ||| | ||| || || |||||| | || | Sbjct 59773 TCAC-GGTAAGGAAGAAATCCGTGCGAGAGATTTATTCCCAGCTCTATGGGTTCCCGATC 59831 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTT-TTGCCCACA-CGAATG 364022 ||| |||||||| || || | | | |||| | | || | || ||| || Sbjct 59832 TTTTCATGAAGCGTGTCGAAGAAAACGGCACTTGGACTTTATTCTCTCCTACATCG--GC 59889 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| | || | |||||||| | || || ||||| || ||| Sbjct 59890 TCCAGGCTTAAGTGACTGCTACGGTGACGAATTTGAAGCCCTATATACCCGTTACGAA-- 59947 Query 364083 GGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | ||| | | | ||||||| || || || || | |||| | || |||| Sbjct 59948 --AAAGAAGGCCGTGGTAAGACTATCAAGGCCCAAAAATTGTGGTACTCTATATTGGAAG 60005 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || ||||||| | | | ||||| ||| | || ||| | || |||| Sbjct 60006 CACAAACGGAAACTGGTACACCCTTTGTTGTTTACAAGGATGCTTGTAACAGGAAATCCA 60065 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || || | ||| || || | ||| | || || ||| |||||||| Sbjct 60066 ACCAAAAGAACTTGGGTGTTATCAAGTCGTCTAACTTGTGCTGTGAAATTGTTGAATACT 60125 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-- 364319 ||||||| || |||||||| || |||||| | || || | || | || || ||| | Sbjct 60126 CCGCTCCAGATGAGACTGCTGTTTGTAACTTGGCTTCTGTTGCTTTGCCAGCATTTATTG 60185 Query 364320 AA-------AAGATGG---------TACTTTTGACCACCAGCATCTTTATGACGTAACCT 364363 || |||| || ||| | | || | | | || |||| || | Sbjct 60186 AAACATCTGAAGACGGCAAAACTTCTACATATAACTTCAAAAAGCTACATGA---AATTT 60242 Query 364364 ATCATGCT---ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTG 364420 | | | | ||| | || | |||| ||||| ||| || |||||||| | | Sbjct 60243 CTAAAGTTATCACTCGTAACTTAAACAACGTTATTGACCGTAACTATTATCCTGTCGAGG 60302 Query 364421 AAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTG 364480 |||| | ||||||||| | || | ||||||| | | ||||| || || | |||| Sbjct 60303 AAGCAAGAAGATCTAATATGAGACACAGGCCGATTGCTTTGGGTGTCCAAGGTTTGGCTG 60362 Query 364481 ACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGG 364540 || ||| ||| || | | |||| || || || || || | ||||||| Sbjct 60363 ACACTTTCATGTTGTTGCGTTTACCATTCGACTCCGAAGAAGCACGCTTACTAAATATAC 60422 Query 364541 AGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCA 364600 | ||||||||||| ||||| ||| | ||| || || ||||| | || ||| Sbjct 60423 AAATCTTTGAAACCATGTACCATGCTTCCATGGAAGCCTCTTGTGAGCTAGCTCAAAGAG 60482 Query 364601 AGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATC 364660 | || ||| || | | || || || ||| || || | | | || || || Sbjct 60483 ATGGCCCATACGAAACCTTCCAAGGCTCTCCAGCTTCTCAAGGTATACTTCAATTCGACA 60542 Query 364661 TATGGAATGTCACGCCAT-CTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG 364719 | ||| | | | || | | || | ||| | |||||||| | | || | | | Sbjct 60543 TGTGGGACGAAAAACCTTACGGTATG-TGGGATTGGGATACTTTGAGAAATGACATCATG 60601 Query 364720 AAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 ||||||||| | | ||||| | | || || ||||| || || || ||| | ||| Sbjct 60602 AAGCATGGTGTTAGAAACTCTTTGACCATGGCACCTATGCCTACTGCATCCACTTCCCAG 60661 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || | || |||||||||| |||||||| |||| ||| | || || || || ||| Sbjct 60662 ATTTTAGGTTACAACGAGTGTTTCGAACCAGTTACTTCCAACATGTACTCTCGTCGTGTT 60721 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 || || || ||||||| || || ||| ||| || | ||| | || || Sbjct 60722 CTATCTGGTGAATTTCAAGTCGTCAATCCATACTTACTGCGTGATTTGGTTGATTTGGGT 60781 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 | |||| ||| | |||||| | ||| | ||| | |||||||| | || | Sbjct 60782 ATTTGGGATGATGGTATGAAGCAATATCTAATCACACAAAATGGTTCCATTCAAGGTTTA 60841 Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCG 365018 ||| | ||| |||| |||| | | || || || || ||||||||||| || | Sbjct 60842 CCAAACGTACCACAAGAATTGAAAGATTTGTATAAGACTGTTTGGGAAATTTCACAAAAG 60901 Query 365019 AACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAA 365078 ||| ||||| | ||||| ||||| || | | || ||| ||| ||| || || || Sbjct 60902 -ACTATCATTAACATGGCAGCCGACCGTGCCGTTTACATCGATCAATCCCATTCTTTGAA 60960 Query 365079 CGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 ||||| || | |||||| | ||||| ||| |||||||||||||| ||||| Sbjct 60961 TTTATTCTTGCGTGCCCCAACCATGGGTAAGCTAACAAGTATGCATTTCTACGGTTGGAA 61020 Query 365139 ATCCGGTCTTAAGACAGGT 365157 ||||| ||||| ||| Sbjct 61021 GAAAGGTCTAAAGACCGGT 61039 >seq5 Length=350035 Score = 159 bits (176), Expect = 9e-34 Identities = 510/779 (65%), Gaps = 13/779 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| | || || | | ||||| || || | | || || ||||||||| Sbjct 95237 TTCACTCACGCTTCCCCCACTCTATTTAATGCCGGTACGCCACACCCTCAAATGTCTTCT 95296 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || || | ||||||||||| |||||||| ||||| | ||||| | || | Sbjct 95297 TGTTTCCTGATTGCCATGAAGGACGACTCCATCGAAGGTATTTACGACACTTTGAAAGAG 95356 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGC 363725 ||||| | |||||||||| |||||| || ||||| | ||| ||||| |||| | | Sbjct 95357 TGTGCCATGATTTCCAAGACTGCAGGTGGTGTTGGTCTTCATATCAACAATATTCGTTCC 95416 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTC 363784 |||| | ||| ||| || || || ||| || |||||| || |||||||| | | Sbjct 95417 ACAG-GCTCTTATATTGCAGGTACCAACGG-TACTTCAAATGGGTTGATTCCCATGATCC 95474 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| || | || ||||| | ||||| ||||| ||||| ||| | || || | Sbjct 95475 GTGTATTCAATAACACTGCACGTTACGTGGACCAAGGTGGTAACAAGAGACCCGGTGCCT 95534 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| | | | ||||| ||||| || || || || ||| |||| | | ||||| Sbjct 95535 TTGCCCTTTTCTTGGAGCCATGGCATGCAGACATCTTCGACTTTGTTGATAT-CAGAAAA 95593 Query 363905 ACAC-GGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || | || || || ||| | |||||| | ||| ||||| ||| || ||| || |||| Sbjct 95594 ACTCATGGTAAGGAAGAAATTCGTGCAAGAGATTTGTTCCCTGCCCTATGGATTCCTGAT 95653 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATG- 364022 | ||| |||||||| || || | | | | ||| | || |||| ||| | || Sbjct 95654 CTTTTCATGAAGCGTGTCGAAGAGGATGGGGCCTGGACCCTATTTTCACCA-AGTTCTGC 95712 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 |||||| | ||| || |||||||| || | | | |||||| || ||| Sbjct 95713 CCCAGGTTTGGACGACGTTTGGGGTGAAGAATTCGAAGAGCTATACACCCGTTACGAA-- 95770 Query 364083 GGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 || ||| | | | |||| || || || || || | |||| |||||| | | Sbjct 95771 --AGAGAAGGTCGTGGTAAAACCATCAAGGCCCAAAAAGTGTGGTACGCCATCTTACAAG 95828 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | || || || || || | ||| | |||||||| | || ||| | ||| ||| Sbjct 95829 CACAAACAGAAACCGGTACGCCATTCATGGTTTACAAAGACGCTTGTAACAGAAAGACCA 95888 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 ||||||| || | ||||| || | | || || ||| ||| || | || || Sbjct 95889 ACCAGCAAAACTTGGGTACTATCAAATCGTCGAATCTGTGTTGCGAAATCGTCGAGTATT 95948 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 | | || || || || || || |||||| | || || || || || || || |||||| Sbjct 95949 CTTCCCCAGATGAAACAGCTGTTTGTAACTTAGCTTCCATTGCCCTACCAGCATTTGTA 96007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352698242228