Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07]
54 sequences; 11,543,596 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq19 123 2e-23
seq13 122 6e-23
seq26 109 4e-19
seq17 104 2e-17
seq45 86.0 4e-12
>seq19
Length=306686
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || | |||| ||||||||| || ||||| |||||
Sbjct 8895 ACCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGA 8836
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | |||| || ||||| || || ||||| || | | |||||| || | ||
Sbjct 8835 CAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8776
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| ||| || ||| ||||| | | || ||| | ||||||
Sbjct 8775 AATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAAC 8716
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| | |||||||| ||||| || || || || ||||| || ||||| ||
Sbjct 8715 TTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8665
>seq13
Length=204060
Score = 122 bits (134), Expect = 6e-23
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || ||||| | |||| |||||||| || ||||| ||||
Sbjct 46928 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 46869
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | |||| || ||||| || || ||||| |||| | |||||| || | |
Sbjct 46868 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAG 46809
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | |||||
Sbjct 46808 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 46749
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308
|||| || || || || ||||| ||||| ||||| || ||
Sbjct 46748 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 46709
>seq26
Length=324517
Score = 109 bits (120), Expect = 4e-19
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || ||||| | |||| ||||||||||| ||||| || |
Sbjct 285864 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGG 285923
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | |||| || ||||| || || ||||| || | | |||||| || | |
Sbjct 285924 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 285983
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||||||||| ||| || || ||||| | | || || | |||||
Sbjct 285984 GGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAA 286043
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308
|||||| || || || ||||| ||||| || || |||||
Sbjct 286044 CTTCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 286083
>seq17
Length=149906
Score = 104 bits (114), Expect = 2e-17
Identities = 163/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | | | ||||| ||||||||| ||||||||||| |||||||| |
Sbjct 122716 TACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCG 122775
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
| | |||| |||| || | |||||| || || || || | | ||||| ||
Sbjct 122776 ATA----GCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCC 122831
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| || | |||||| |||||| ||||| ||| || || | || |||||| | |
Sbjct 122832 GGAGGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGAT 122891
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || |||||||| ||||| |||| || || ||||| || |||||
Sbjct 122892 TCGACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCAT 122944
>seq45
Length=885501
Score = 86.0 bits (94), Expect = 4e-12
Identities = 202/295 (68%), Gaps = 10/295 (3%)
Strand=Plus/Plus
Query 6199 CGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258
|||||||||| ||||||||||| | ||| || |||||||| |||| || |||||||
Sbjct 623471 CGTTCTACCGTTACAAAATGCCTCCAATCCAGGCTAAGGTCGAAGGTAGAGGTAACGGTA 623530
Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC-GCCCTGCCACC 6317
| ||||| | || | ||| || |||| |||| | ||| | | || | |||||| |
Sbjct 623531 TCAAAACAGCAATCCTGAACGTGGCTGACATCGCCCATGCG-TTGAACAGACCTGCCCCA 623589
Query 6318 TAC-CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA-CAAAA 6375
||| || | || || ||||| | |||||| || ||||| || | | | || | | |
Sbjct 623590 TACATCGTC-AAGTACTTCGGTTTCGAACTGGGTGCTCAAAC-CTCTATCTCCATCGACA 623647
Query 6376 ACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACG 6435
| || || | | |||||||| ||| | |||| ||| |||| ||| | | ||||
Sbjct 623648 AAGATCGTTATTTGGTTAACGGTGTTCATGAACCTGCTAAGTTGCAAGACGTGTTGGACG 623707
Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA--TGCGATAACCCGGAGACCGAG 6488
| || || || |||||| || ||| |||| || | || || || ||||||
Sbjct 623708 GGTTCATCAACAGGTTTGTTCTTTGT--GGAAGTTGTAAGAATCCAGAAACCGAG 623760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946979562874
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |