Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq19 123 2e-23 seq13 122 6e-23 seq26 109 4e-19 seq17 104 2e-17 seq45 86.0 4e-12 >seq19 Length=306686 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || | |||| ||||||||| || ||||| ||||| Sbjct 8895 ACCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGA 8836 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 |||| | |||| || ||||| || || ||||| || | | |||||| || | || Sbjct 8835 CAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 8776 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||| || ||| ||||| | | || ||| | |||||| Sbjct 8775 AATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAAC 8716 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| | |||||||| ||||| || || || || ||||| || ||||| || Sbjct 8715 TTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8665 >seq13 Length=204060 Score = 122 bits (134), Expect = 6e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || ||||| | |||| |||||||| || ||||| |||| Sbjct 46928 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 46869 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| || ||||| || || ||||| |||| | |||||| || | | Sbjct 46868 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAG 46809 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | ||||| Sbjct 46808 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 46749 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 |||| || || || || ||||| ||||| ||||| || || Sbjct 46748 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAA 46709 >seq26 Length=324517 Score = 109 bits (120), Expect = 4e-19 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | ||| || ||||| | |||| ||||||||||| ||||| || | Sbjct 285864 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGG 285923 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | |||| || ||||| || || ||||| || | | |||||| || | | Sbjct 285924 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 285983 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||| || || ||||| | | || || | ||||| Sbjct 285984 GGATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAA 286043 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 |||||| || || || ||||| ||||| || || ||||| Sbjct 286044 CTTCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 286083 >seq17 Length=149906 Score = 104 bits (114), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | | | ||||| ||||||||| ||||||||||| |||||||| | Sbjct 122716 TACCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCG 122775 Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 | | |||| |||| || | |||||| || || || || | | ||||| || Sbjct 122776 ATA----GCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCC 122831 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | || | |||||| |||||| ||||| ||| || || | || |||||| | | Sbjct 122832 GGAGGAATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGAT 122891 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || |||||||| ||||| |||| || || ||||| || ||||| Sbjct 122892 TCGACCTCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCAT 122944 >seq45 Length=885501 Score = 86.0 bits (94), Expect = 4e-12 Identities = 202/295 (68%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 6199 CGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 |||||||||| ||||||||||| | ||| || |||||||| |||| || ||||||| Sbjct 623471 CGTTCTACCGTTACAAAATGCCTCCAATCCAGGCTAAGGTCGAAGGTAGAGGTAACGGTA 623530 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC-GCCCTGCCACC 6317 | ||||| | || | ||| || |||| |||| | ||| | | || | |||||| | Sbjct 623531 TCAAAACAGCAATCCTGAACGTGGCTGACATCGCCCATGCG-TTGAACAGACCTGCCCCA 623589 Query 6318 TAC-CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA-CAAAA 6375 ||| || | || || ||||| | |||||| || ||||| || | | | || | | | Sbjct 623590 TACATCGTC-AAGTACTTCGGTTTCGAACTGGGTGCTCAAAC-CTCTATCTCCATCGACA 623647 Query 6376 ACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACG 6435 | || || | | |||||||| ||| | |||| ||| |||| ||| | | |||| Sbjct 623648 AAGATCGTTATTTGGTTAACGGTGTTCATGAACCTGCTAAGTTGCAAGACGTGTTGGACG 623707 Query 6436 GCTTTATTCGCAAGTTTGTGCTGTGTCGGGAA--TGCGATAACCCGGAGACCGAG 6488 | || || || |||||| || ||| |||| || | || || || |||||| Sbjct 623708 GGTTCATCAACAGGTTTGTTCTTTGT--GGAAGTTGTAAGAATCCAGAAACCGAG 623760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946979562874