Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq17 136 3e-27 seq19 118 8e-22 seq13 114 9e-21 >seq17 Length=149906 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || || ||||| || || || ||||| ||||||||||| Sbjct 122718 CCACCTCTTAGCCTTAGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGAT 122777 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | |||||| |||||| | ||||| | ||||||||| ||| Sbjct 122778 AGCGTTCTACCGTCTTCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGA 122837 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || |||||||| | ||| || Sbjct 122838 ATGCCTTCCTTGTCCTGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCGACC 122897 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || ||||| ||||| || || || |||||||||||| Sbjct 122898 TCCAAAGTAATAGTCTTACCAGTCAGTGTCTTGACGAAAATTTGCATA 122945 Score = 93.3 bits (102), Expect = 3e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | ||| | || || ||||||||||| || ||||| ||||||||||| Sbjct 121722 TGCCACCTCTTAGTCTCAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCG 121781 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || |||| | ||||| | |||||| || || | ||||| | ||||||||| | Sbjct 121782 ACAGCGTTCTACCATCTTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGAG 121841 Query 15068 GAATTCCTTCCTTGTC 15083 |||| ||||||||||| Sbjct 121842 GAATACCTTCCTTGTC 121857 >seq19 Length=306686 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || | || || || ||||| |||||||| || Sbjct 8894 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 8835 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| ||||||| ||||| || ||||| | ||||| | |||||||| |||| Sbjct 8834 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8775 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| || || ||| | || || || || | ||| || Sbjct 8774 ATACCTTCCTTGTCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACT 8715 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | |||||| || ||||| || | ||| || || ||||||||||| || Sbjct 8714 TCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8665 >seq13 Length=204060 Score = 114 bits (126), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || |||||||| | || || || ||||| |||||||| || | Sbjct 46926 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA--G 46869 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| ||||| || ||||| | || || | |||||||| | Sbjct 46868 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAG 46809 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || ||| | || ||||| || | ||| | Sbjct 46808 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 46749 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 | || || || ||||| ||||| |||| |||||| |||||| Sbjct 46748 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAA 46708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391764791390