Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq26 111 1e-19 seq19 111 1e-19 seq17 104 2e-17 seq13 104 2e-17 seq5 82.4 7e-11 >seq26 Length=324517 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || ||||||||||| || || || ||| | |||| || Sbjct 285878 CTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCG 285937 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || |||||||| Sbjct 285938 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCTTTG 285997 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || ||||| || | |||||| ||||| || ||||| ||||| | Sbjct 285998 TCTTGAATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAGAGTGATG 286057 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAA 45331 || || || || | ||| || || || Sbjct 286058 GTCTTACCAGTCAAAGTCTTAACGAA 286083 >seq19 Length=306686 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || | || || ||||||||||| || || || | ||| | Sbjct 8882 CTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCG 8823 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || ||||| ||||| || Sbjct 8822 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 8763 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | |||||| ||||| || ||||| || |||| Sbjct 8762 TCTTGAATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAACTTCAAGGGTAATA 8703 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||||| ||| || || |||||||||||| Sbjct 8702 GTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATC 8667 >seq17 Length=149906 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || ||||| | ||| || || |||| |||| Sbjct 122742 TGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGATAGCGTTCTACCGTCTTCCAGTTGT 122801 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| | || |||||||| ||||||||||| || || || ||||| Sbjct 122802 TTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATTTTG 122861 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || || ||||| ||||| || | ||||| || || || || Sbjct 122862 GACTTGA-CGTTGTCGATAGTATCAGAAGATTCGACCTCCAAAGTAATAGTCTTACCAGT 122920 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||||||||| Sbjct 122921 CAGTGTCTTGACGAAAATTTGCAT 122944 >seq13 Length=204060 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || || || | |||| || Sbjct 46914 CTCAAGACTAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCG 46855 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | || |||| ||| ||||| || || || ||||| || Sbjct 46854 TCTTCCAATTGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGGATACCTTCCTTG 46795 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| ||| |||| || | ||||| ||||| || ||||| | ||| | Sbjct 46794 TCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATG 46735 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAA 45332 || || || || | |||||| |||||| Sbjct 46734 GTCTTACCAGTCAAAGTTTTGACAAAA 46708 >seq5 Length=350035 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 123595 AAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAA 123654 || ||||| |||||||| ||||| | |||| | ||||||||||| || ||||| || | Sbjct 95826 AAGCACAAACAGAAACCGGTACGCCATTCATGGTTTACAAAGACGCTTGTAACAGAAAGA 95885 Query 123655 CCAATCAGAGCAACTTGGGAACAATAAAAT-GTAGTAATCTTTGCTCCGAAATTATCGAA 123713 |||| ||| |||||||| || || |||| || | ||||| || | |||||| |||| Sbjct 95886 CCAACCAGCAAAACTTGGGTACTATCAAATCGTCG-AATCTGTGTTGCGAAATCGTCGAG 95944 Query 123714 TA 123715 || Sbjct 95945 TA 95946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002894897840