Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 165 1e-35 seq2 114 2e-20 >seq4 Length=66942 Score = 165 bits (182), Expect = 1e-35 Identities = 771/1211 (64%), Gaps = 36/1211 (3%) Strand=Plus/Minus Query 116062 TCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATAT 116121 |||||||| || || || || |||||||| || ||||| || || | || || || ||| Sbjct 60549 TCCCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTAT 60490 Query 116122 GGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 ||||| || | || | || | || || | || || || ||||| || ||| Sbjct 60489 GGGCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCA 60430 Query 116182 AAAATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAA 116239 || || | ||| | | || | || || ||||| || || | | ||| |||| | Sbjct 60429 AAGATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACA 60372 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 | || || || | |||||||||||| | |||| || | |||||||||||||| Sbjct 60371 TGAAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATC 60312 Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 ||| || ||| || |||||| | || | || ||||| | |||| || |||| Sbjct 60311 TTCTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGA 60252 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA- 116412 ||| || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 60251 TAACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAG 60192 Query 116413 ---TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 || ||| | || | || | || |||| ||||| |||| |||||||| Sbjct 60191 ATGTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTG 60132 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 | | | ||| || | |||||| ||||| || || ||| || |||||||||| Sbjct 60131 GAGCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCT 60072 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 |||| || || || ||||||| ||||||||||| | | | | || || || || |||| Sbjct 60071 TTTGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCG 60012 Query 116588 TTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCC 116647 |||| | | | |||| | ||| | | ||| | ||| || | || | Sbjct 60011 TTTGTGCTTCCAATATAGAGTACCACAATTTTTGGGCCTTGATAGTC---TTACCACGGC 59955 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCA--CAGCCTCTGAGAG 116705 | || | ||||| || || ||||| ||||| || ||||| ||| | || | || Sbjct 59954 CTTCTTTTTCGTAACGGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTA-AG 59896 Query 116706 CCCTGGTGCCTTATCT-GGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 116764 || ||| ||| || | ||| |||| | || ||| || || || || ||||||| Sbjct 59895 CC-TGGAGCCG-ATGTAGGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCA 59838 Query 116765 TGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 116824 |||| || || || | ||| || || | ||| | ||| | || |||||| | | Sbjct 59837 TGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTAC 59778 Query 116825 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 116884 | ||||| | | || | ||||| | |||||| |||||||| || |||| || | Sbjct 59777 CGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATA 59718 Query 116885 CCGCGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGT 116938 || | | || |||| || ||| ||||| ||||| | || || || Sbjct 59717 GAGCAAAGGCACCAGGTCTCTTGTTACCACC---CTGGTCAACATAACGGGCAGTGTTGT 59661 Query 116939 TAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG 116998 | || || || | ||| ||||| | || | ||| || || || || ||| || Sbjct 59660 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 59601 Query 116999 ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 117058 | | | || | | | ||| || || | ||||||||| || || || || || Sbjct 59600 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 59541 Query 117059 GTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 117118 || || ||| | | | || ||||||| || || || || ||| |||| |||| | | Sbjct 59540 AAGCACATTCCTTCAAAGTGTCGTAGATGCCTTCAATGGAATCATCCTTCATTGCAACTA 59481 Query 117119 GGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGT 117178 |||| ||| |||||||| ||| ||||||||||||||||||| | ||||| | |||| Sbjct 59480 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 59421 Query 117179 GGATGAACATACCTT-GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCC 117237 || || || || |||||||| | ||||| || | | | ||||| || Sbjct 59420 -GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCA 59362 Query 117238 CCGTGAATACC 117248 ||||||||||| Sbjct 59361 CCGTGAATACC 59351 >seq2 Length=799714 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 163353 CCAGTAGGTGTGTACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAGAGCGGTATC 163412 ||||| ||| |||||| | | || |||||||| || || || ||||| | |||||| Sbjct 711838 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 711897 Query 163413 CAAGTTGGTGCGGGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGTCGTTCTCTTC 163472 ||| ||||| |||||||| || ||||||||| ||||||||||| || | | || Sbjct 711898 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 711957 Query 163473 AATCACGGACACATGGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 163532 ||||| || | ||||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 711958 AATCATTCGCAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 712017 Query 163533 GAGAGG 163538 || ||| Sbjct 712018 GAAAGG 712023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506785882640