Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07]
54 sequences; 11,543,596 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 143 3e-29
seq5 134 2e-26
>seq4
Length=66942
Score = 143 bits (158), Expect = 3e-29
Identities = 577/896 (64%), Gaps = 37/896 (4%)
Strand=Plus/Minus
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270
|||| || | ||| || | ||| |||||| |||||||| || | | | |||||| |
Sbjct 59840 TCATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCT 59781
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
| || |||| || ||| || | ||||| | |||||||| |||||||| || ||||
Sbjct 59780 TACCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAAT 59721
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
||| || | |||| |||| || ||||| || || || | ||| | |||||| ||||
Sbjct 59720 ATAGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGT 59661
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450
| | || | | ||| || | | || || || | || || || || | ||| |||
Sbjct 59660 TGAAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAG 59601
Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510
|| | || | || || ||| | ||| |||||||| || |||| || || |
Sbjct 59600 AGCCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 59541
Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570
|||||| || | || || || || ||||| || |||||| |||| | ||
Sbjct 59540 AAGCACATTCCTTCAAAGTGTCGTAGATGCCTTCAATGGAATCATCCTTCATTGCAACTA 59481
Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630
| ||||| |||||||| || | || || | || ||||| |||||||| || |
Sbjct 59480 GGAAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGT 59421
Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT---ATCCC 48687
|| |||| |||| || | ||| ||||| ||||| | | | | || || ||| |
Sbjct 59420 GAGTAAAGTATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCAC 59361
Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747
||| ||||||| | || | ||| | | | ||| || | |||| ||| ||
Sbjct 59360 CGTGA---ATACCTAAGGCGACTCTCATGATTAAGTGTTGTGGACGTTCAGCAACTTGAC 59304
Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAA 48806
|| | | |||| | || || ||| || ||||||||||| || || |||| ||||
Sbjct 59303 CGTTGACTCTCAATAAGTACGAACGTTCTAAAGTTTTAAAACCGAAGTAACTGTACTGAA 59244
Query 48807 AAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TAT----ATACT- 48860
|| || | |||| | ||| | ||| |||| | | ||||| | || || ||| |
Sbjct 59243 AA-TCTCTGTCATAGACAATAGCTGAGTTTAGTTTATCCTTGTTTTCCATGACAATATTG 59185
Query 48861 ---ACATC--CATTA--CAT---------TTTTTGA-TATAA---TTGA-TTCCTTGTAA 48899
||||| || | ||| ||| | || | |||| | | |||
Sbjct 59184 TAAACATCGTCAGAAATCATAGGAGCGGCTTTACCAGTAGCAGGGTTGACGTATCTATAA 59125
Query 48900 AGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGAT 48959
||||| || ||||| | | ||| ||| | |||| |||||| | |||||| || |
Sbjct 59124 AGATCCTCAACAACTTTAGAAAACTGTTTCGTGGTTTGTTTATGTAAATTAGAAATGGCG 59065
Query 48960 ATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATATTTC 49018
||||||||||| || |||| |||||||| |||| || || ||||| | | || ||||
Sbjct 59064 ATTCTAGCAGCCAAAGTAGCGTAATCTGGGTGAACAGTGGT-CATGTAAGCACATGTTTC 59006
Query 49019 TGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAA 49074
|| || || |||||| || | || || |||||| ||| | ||| |||||
Sbjct 59005 AGCGGCCAAATTATCTAGCTCGATCGTTGTGACACCTTCATAGACACCTGAAATAA 58950
>seq5
Length=350035
Score = 134 bits (148), Expect = 2e-26
Identities = 592/934 (63%), Gaps = 7/934 (1%)
Strand=Plus/Minus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || || || |||| ||||| |||||| |||| ||| || ||| | | |||
Sbjct 95994 AGGGCAATGGAAGCTAAGTTACAAACAGCTGTTTCATCTGGGGAAGAATACTCGACGATT 95935
Query 47937 TCAGCACATAGATTACCAC-ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995
|| ||| ||||| | || |||||||||||||||| ||||| || || | ||||
Sbjct 95934 TCGCAACACAGATT-CGACGATTTGATAGTACCCAAGTTTTGCTGGTTGGTCTTTCTGTT 95876
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
||| ||||| ||||||| ||| || || || || |||||| | || | || | ||| |
Sbjct 95875 ACAAGCGTCTTTGTAAACCATGAATGGCGTACCGGTTTCTGTTTGTGCTTGTAAGATGGC 95816
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||| || | ||||| || | | || | | || |||||| ||
Sbjct 95815 GTACCACACTTTTTGGGCCTTGATG---GTTTTACCACGACCTTCTCTTTCGTAACGGGT 95759
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
|||| || || ||||| || || | || | || || || || | | || |
Sbjct 95758 GTATAGCTCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGGGCAGAACTTGGTGA 95699
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
| | | ||| || |||| | || || | |||| || | ||| || ||||| ||
Sbjct 95698 AAATAGGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAG 95639
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
|| || ||||| || | | | |||||| || ||| | | || | | ||||
Sbjct 95638 GGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGAGTTTTTCTGATATCAAC 95579
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
|||||| | || || ||||||||||| || || | | || | |||| |||| ||
Sbjct 95578 AAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAAAGGCACCGGGTCTCTT 95519
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
||||| ||||| || | || | ||||| || || | || | | ||| || | |
Sbjct 95518 GTTACCACCTTGGTCCACGTAACGTGCAGTGTTATTGAATACACGGATCATGGGAATCAA 95459
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475
|||||||| |||| ||||| || | ||||||| || | | | ||||| | ||
Sbjct 95458 CCCATTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTGTGGAACGAATATTGTTGAT 95399
Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535
|| ||| | ||||||||| | || || || | |||||| ||| | || || ||
Sbjct 95398 ATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCACACTCTTTCAAAGTGTCGTA 95339
Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595
||| ||||| || || || |||| | || |||||| ||||||||| || ||
Sbjct 95338 AATACCTTCGATGGAGTCGTCCTTCATGGCAATCAGGAAACAAGAAGACATTTGAGGGTG 95279
Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655
|| || | |||||||| || || || || ||| | || || || ||| | |||
Sbjct 95278 TGGCGTACCGGCATTAAATAGAGTGGGGGAAGCGTGAGTGAAGTATCTCAATGACATCAA 95219
Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715
|| || || | | || || || || || | || ||||| | | ||||||||
Sbjct 95218 GTTGTAAGTCTTCAGCACGGACTCGATGTCGCTACCGTGGATACCCAGGGCCACACGCAT 95159
Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775
| || || ||| || | ||| | | || | | || | | | | || || |||
Sbjct 95158 GACCAGATGTTGGGGACGTTCGGCCACTTCGCCGTCTAGTCTTAGCAAGTAGGAACGTTC 95099
Query 48776 CAATGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807
||| || || || || |||||| |||| |||||
Sbjct 95098 CAAAGTCTTGAACCCGAAATAGGTGTACTTGAAA 95065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108420576560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |