Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4 140 2e-28 seq5 120 2e-22 >seq4 Length=66942 Score = 140 bits (154), Expect = 2e-28 Identities = 316/473 (67%), Gaps = 4/473 (1%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||| |||||||| |||| | |||| || || || ||| || | ||| |||| | Sbjct 59880 GGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACC 59821 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | || |||||||||||||| | |||||||| || |||||||||||| | | Sbjct 59820 CATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATG 59761 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 || | ||| || || ||||| | ||||||||| || ||||| | |||||| ||| | Sbjct 59760 TCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGT 59701 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 || || ||||| || || || || | ||||| | ||||| || | ||| ||| Sbjct 59700 CTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATAGGA 59641 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 | ||| || | ||| ||||| || | | ||| | || || || | | ||| | | Sbjct 59640 ATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTG 59581 Query 26192 TGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAACTG 26249 ||| ||| | ||| || |||||||| ||| ||||| ||||| || | ||| | Sbjct 59580 TGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAA--G 59523 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| | || |||| ||| |||| | |||||| | | || ||||| || || | || Sbjct 59522 TGTCGTAGATGCCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTT 59463 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | ||| || | || ||||| || || | || |||||| | ||| Sbjct 59462 GAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTAT 59410 >seq5 Length=350035 Score = 120 bits (132), Expect = 2e-22 Identities = 287/434 (66%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || ||| || | ||| |||||||| | ||| || |||||||| || | |||||||| Sbjct 95665 CTTCATGAAAAGATCAGGAATCCATAGGGCAGGGAACAAATCTCTTGCACGAATTTCTTC 95606 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || || ||| | ||| | | ||| | || || || || |||| |||||||| || || Sbjct 95605 CTTACCATGAGTTTTTCTGATATCAACAAAGTCGAAGATGTCTGCATGCCATGGCTCCAA 95546 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 | | ||||| ||| ||| || |||||||| || ||||| | |||||| | Sbjct 95545 GAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTAACGTGCAGTGTT 95486 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 |||||| || | ||| |||| || ||| ||||| ||||| || | ||| | Sbjct 95485 ATTGAATACACGGATCATGGGAATCAACCCATTTGAAGTACCGTTGGTACCTGCAATATA 95426 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 || ||||| || | ||||| || ||||| ||| | ||||| || || ||||| Sbjct 95425 AGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCACCTGCAGTCTTGGAAAT 95366 Query 26230 AGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 ||||| ||| | || ||| |||| |||| ||| || | ||||| | | Sbjct 95365 CATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGTCGTCCTTCATGGCAAT 95306 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | ||||||||||| | ||| | || | || || | |||||||| || || | ||| Sbjct 95305 CAGGAAACAAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAAATAGAGTGGGGGAAGC 95246 Query 26350 ATGAGTATAATATC 26363 ||||| | |||| Sbjct 95245 GTGAGTGAAGTATC 95232 Score = 95.1 bits (104), Expect = 6e-15 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 ||||||||||| |||||| ||||||||||| | || | ||||| || ||||| || || Sbjct 96526 GTTTGAAGTGACTGGTTCGAAACATTCATTGTACCCAAGAATTTGGGATGTAGAAGCGGT 96467 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| || || || || ||||| || |||| ||| ||||| || | ||||| Sbjct 96466 TGGCATTGGGGCCATGGTTAAAGAGTTTCTTAACCCATGTTTGACAATGTCCTTCTTTAA 96407 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAA 25227 | |||||||| | || | | || || | || || || || |||||||| Sbjct 96406 AGTGTCCCAATCCCACATACCAAATGGCT---TAGCATT-CCACAT--GTCGAATTGTAA 96353 Query 25228 CAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTT 25274 ||| | ||| | ||||| || |||||||| ||||||||||||| Sbjct 96352 -AATACCCTTAGAGGCAGGAGAGCCTTCAAAAGTGGAATATTTACCTT 96306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039833468050