Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 221 4e-52 seq54 113 1e-19 seq19 93.3 1e-13 seq10 91.5 4e-13 seq31 89.7 2e-12 >seq4 Length=66942 Score = 221 bits (244), Expect = 4e-52 Identities = 615/935 (66%), Gaps = 14/935 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 ||| ||| |||| ||||| || |||||||| | || | || |||||| ||||| ||| Sbjct 60167 CAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGAG-CGGAGTATTCAACAATTTCA 60109 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||||||| |||||| |||||| || || ||||| ||||| ||||| ||||||||| Sbjct 60108 CAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCCTGTTACAA 60049 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG- 155764 ||||||||||| | || | || || || || ||| | ||||| |||| || | || Sbjct 60048 GCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTTTGTGCTTCCA--ATATAGAGT 59991 Query 155765 -CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATAT 155823 ||| | | |||| || || ||| | |||||| || || ||| Sbjct 59990 ACCACAATTTTTGGGCCTTGATAGTCTTACCA---CGGCCTTCTTTTTCGTAACGGGTAT 59934 Query 155824 ACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG-GCACTTATCGGGGCAA 155882 | || | | | || |||||||| || ||||| | || || || | | || | | Sbjct 59933 ATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTAAGCCTGGAGCCGATGTAGGAG-AG 59875 Query 155883 AACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATA 155942 || | | |||| | || | ||||||| ||| || | ||| |||| | | Sbjct 59874 AATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACCCATAGA 59815 Query 155943 GCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAG 156002 || ||| | || || || || || | ||||||||||| | | || | | Sbjct 59814 GCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATGTCGATG 59755 Query 156003 AATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG 156062 || || ||||||| || |||||||| ||| | |||||| |||| |||||| Sbjct 59754 AAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGTCTCTTG 59695 Query 156063 ---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 |||||||| || ||||| || ||||| || |||||||||| | ||||||||| | Sbjct 59694 TTACCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATAGGAATTAAC 59635 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 || || ||||| || || || || ||| | || || | || |||| || |||||| Sbjct 59634 CCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTGTGAATA 59575 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 ||||| ||||||||||| | ||| ||||| ||| |||||||| | ||| | | | Sbjct 59574 TGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAAGTGTCGTAG 59515 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || |||||||| |||||||| | ||||| | ||| | || || | |||||| | Sbjct 59514 ATGCCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACATTTGAGGCTTT 59455 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAA 156359 ||||| ||||||||||||| || || | || ||| |||| || || ||||| | Sbjct 59454 GGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTATTTTAGGGACATCAAG 59395 Query 156360 TCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATC 156419 | || || || | ||||| ||| |||||||||| | | ||| ||||| Sbjct 59394 TTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACCTAAGGCGACTCTCATG 59335 Query 156420 CACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCC 156479 | || || ||||| || ||| || | | || || | ||| | ||||| Sbjct 59334 ATTAAGTGTTGTGGACGTTCAGCAACTTGACCGTTGACTCTCAATAAGTACGAACGTTCT 59275 Query 156480 AGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 | ||||||||| ||||| ||| || ||||||| Sbjct 59274 AAAGTTTTAAAACCGAAGTAACTGTACTGAAAATC 59240 >seq54 Length=422976 Score = 113 bits (124), Expect = 1e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| | || ||| || ||| || ||||| | | |||| ||||||||| Sbjct 194378 TTTCTTGTGGTGTTGTCGTAATGAACCATGATATCTTCTAGAGCTTTGACTAAACGACGT 194437 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || ||| || ||||| ||||| || ||||| ||||||||||| Sbjct 194438 TGAATATAACCTGTTTCAGCTGTCTTAACAGCAGTATCGATAAGACCTTCACGACCACCC 194497 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || ||||||||||| | ||||| Sbjct 194498 ATTGCATGGAAGAAAAACTCTT 194519 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||| | | ||| |||||||| || || || |||||| || ||||| || || Sbjct 193639 AATTTCCTTTAAACGAGGAACACCGGAAGTGACTTT---CTTGGAAGCCACACCGGCGAA 193695 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||||||||| || | ||| |||| ||||||||| || ||| || |||| | Sbjct 193696 ATGGAAAGTATTCAGTGTCATTTGTGTAGCTGGCTCACCGATGGATTGAGCTGCAAGAAC 193755 Query 301935 ACCAACCATTTCTCCTGG 301952 |||||||||||| || || Sbjct 193756 ACCAACCATTTCACCAGG 193773 >seq19 Length=306686 Score = 93.3 bits (102), Expect = 1e-13 Identities = 301/461 (65%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 233259 TTAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCA 233318 |||| |||| | |||||||| || |||||||||||||||||||||||||||| | | Sbjct 277043 TTAAGAATGAAGCGGCACCGTGTGCGATCATACAATCACGTTCCATTTCACCAAATCTTA 276984 Query 233319 GACCACCATCATTTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCT 233378 |||||| || |||| ||||| | || | ||| | |||||||| ||||||| Sbjct 276983 AACCACCGTCTCTTGATCTACCTTCCACCGGTTGTCTTGTTAAAACTTGCATTGGACCAC 276924 Query 233379 GAGCACGATAATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGAC 233438 | || | || ||| || || | |||||||| | | | ||||| |||| Sbjct 276923 GGGCTCTGGCATGAATCTTGTCATCCACCATATGTCTTAAACGTTGGTAATATGTAGGAC 276864 Query 233439 CAATAAATAGTTCTGCGTGTAATTGTTCCCCAGATTCACCGCTGTATAAAACTTCATTAC 233498 ||| || | || || ||||| || || | | ||| |||| | ||||||| | Sbjct 276863 CAAAGAAGATTTGAGCCATTAATTTTTTACCTGTGTGACCATTGTACATAACTTCAAACC 276804 Query 233499 C-CGATGAATTGTAACCAATATCTTTTAATAGAGAACCAAATACCTGATGCTTTGGACCT 233557 | ||| || | ||||||| || ||||| | | ||||| | || | Sbjct 276803 CACGA-GATTGGTAACCATGTTCACGTAATA-ATTTAGATATACCCTCTACTGT-----A 276751 Query 233558 TTATTAGCAAACGCAGTACAATCACCAAAACCACCATACGTCGCACACGCTTTACCCATT 233617 | | | ||| | || | |||||| |||| | ||| | | |||| || | Sbjct 276750 ATGTCTGTAAATGGAGAAGCATCACCTTCGTTACCAGATAATGCAGCCACCTTACTCAAT 276691 Query 233618 AAAGTTTCTATCAACTGACCGATAGTCATTCTACTTGGTAGAGCGTGTGGATTGATAATT 233677 ||| ||| || || || | | |||||| | | ||| | ||| || |||||||||||| Sbjct 276690 AAACATTCGATTAAATGCGCCACAGTCATACGAGATGGAATAGCATGAGGATTGATAATT 276631 Query 233678 AAATCTGG-ACGTACTCCCTCCGATGTAAAAGGCATATCTT 233717 |||||||| ||| | || || | |||||| |||||||||| Sbjct 276630 AAATCTGGTACG-ATACCTTCTGCTGTAAATGGCATATCTT 276591 Score = 91.5 bits (100), Expect = 4e-13 Identities = 370/571 (65%), Gaps = 14/571 (2%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| | ||| || ||| ||||||| ||||| || || | |||| ||| || Sbjct 277090 ACAAATATGAACTCTGAAAGCATCGGATGCTTCCATTAATCTTTCCTTTAAGAATGAAGC 277031 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||||||| |||||||||||||| ||||||||||| || | | |||||| || | Sbjct 277030 GGCACCGTGTGCGATCATACAATCACGTTCCATTTCACCAAATCTTAAACCACCGTCTCT 276971 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 | ||||| || | || || | || | | ||| ||||| || | | ||| Sbjct 276970 TGATCTACCTTCCACCGGTTGTCTTGTTAAAACTTGCATTGGACCACGGGCTCTGGCATG 276911 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCT 251663 ||| |||| |||||||| | | ||| ||||| ||| ||||| | |||||| | Sbjct 276910 AATCTTGTCATCCACCATATGTCTTAAACGTTGGTAATATGTAGGACCAAAGAAGAT--T 276853 Query 251664 CGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTC 251720 || | |||| | | || || || | || ||||||||||| ||| ||||| Sbjct 276852 TGA-GCCATTAATTTTTTACCTGTGTGACCATTGTACATAACTTCAAACCCACGAGATTG 276794 Query 251721 ATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGT 251780 |||||| ||| ||| | || ||| | | | || ||| | || || ||| Sbjct 276793 GTAACCATGTTCACGTAATAATTTAGATATACCCTCTA-CTGTAATGT-CTGTAAATGGA 276736 Query 251781 GCCG--TCTCCGTAAAGACCCATTTGAATCAAC-ACTTTGCCTAAAAGTGTCTCTTTCAG 251837 | | || || | ||| | | | || | || || | || | || | | Sbjct 276735 GAAGCATCACCTTCGTTACC-AGATAATGCAGCCACCTTACTCAATAAACATTCGATTAA 276677 Query 251838 TTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAG 251897 || || | |||||||||| ||||||||||| |||||||| || | || ||| | Sbjct 276676 ATGCGCCACAGTCATACGAGATGGAATAGCATGAGGATTGATAATTAAATCTGGTACGAT 276617 Query 251898 TCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTT 251956 || || || || || ||||||| ||| || | ||| || | |||||||| ||||||| Sbjct 276616 ACCTTCTGCTGTAAATGGCATAT-CTTCTCTACGATATGTGATACCAATAGTACCCTTTT 276558 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || ||||||||| ||| || ||||| || Sbjct 276557 GACCATGACGAGAAGCGAATTTGTCACCGAT 276527 >seq10 Length=319727 Score = 91.5 bits (100), Expect = 4e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | |||||| | |||||| | |||||||||||| | | |||||||||||| | Sbjct 40207 GCACCATAAGCAATGACACAATCTCTTTCCATTTCACCTAATCTCAGACCACCATCTCTA 40266 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTA 233392 |||||||| | | |||||| || || || | ||| ||||| |||| | | Sbjct 40267 GACCTACCTTCAGTAGGTTGACGCGTCAAGACCGCTCTAGGACCACGAGCTCTTGCGTGC 40326 Query 233393 ATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTCT 233452 || |||||| ||||||||||||| | | ||||||| || |||| ||| | | | Sbjct 40327 ATCTTATCTAAGACCATATGCTTCAATTTTTGATAATAAATTGGCCCAAAAAAGATATAT 40386 Query 233453 GCGTGTAA 233460 || ||||| Sbjct 40387 GCTTGTAA 40394 >seq31 Length=898704 Score = 89.7 bits (98), Expect = 2e-12 Identities = 247/378 (65%), Gaps = 3/378 (1%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||||||||| ||||| | | ||| ||| || | || |||| || || || | Sbjct 429096 CCTATCAAATCTACCGGGTCTTAATAAGGCTTTATCAAGGATGTCGGGCCTATTAGTACC 429155 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 ||||| ||||||| | || | | | |||| |||||||| || |||||||| Sbjct 429156 AGCCAAGACAACAACATGATCAGCTGGAGTAAAACCATCCATTTCCACCAACATTTGATT 429215 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 | ||| | ||| ||||||||||| | |||| ||| ||| | || ||| Sbjct 429216 CAATGTGTTTTCTCTTTCATCATTAGCACCTGAAAAATTACC---TTTTTGTCTAGCTTT 429272 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | |||||||||||||||||| || | | | |||| |||| || ||| || Sbjct 429273 CCCGATAGCATCAATTTCGTCAATAAACACAATCGAAGGAGCGTTTTCCCTTGCAGTTTT 429332 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || |||||||| | | || || | ||| ||| ||||||| ||||| || ||| | Sbjct 429333 GAACAAATCTCTTACCCTTGCAGCACCGACACCTACAAACATTTCAACAAACTCTGAACC 429392 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||| || | ||||| || || || || || ||| |||| || | || || Sbjct 429393 GGAAACAAAATAGAATGGGACGCCGGCCTCACCGGCGGTAGCCTTCGCAAGCAAGGTTTT 429452 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| || || ||||| || Sbjct 429453 ACCGGTACCTGGTGGACC 429470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816581686198