Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq26 136 3e-27 seq17 122 7e-23 seq19 116 3e-21 >seq26 Length=324517 Score = 136 bits (150), Expect = 3e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || ||||| | |||||||| ||||||||||| || || | Sbjct 285866 CCACCTCTCAATCTCAAGACTAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 285925 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | || || | ||| || |||||| | ||||||||||| || || || || Sbjct 285926 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 285985 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||| || | ||||||| | || | ||||||||| ||| || Sbjct 285986 ATACCTTCTTTGTCTTG-AATCTTGGATTTGACATTGTCAATGGTGTCAGAAGATTCAAC 286044 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 ||| ||||| || || || ||||| || || ||||| || Sbjct 286045 TTCTAGAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 286083 >seq17 Length=149906 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| ||||| |||||||| ||||||||||| ||||||| | || | | || Sbjct 122733 AGGACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCCGATAGCGTTCTACCGTCT 122792 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || |||||||| ||||| | ||||| || || || ||||| ||||| || || ||||| Sbjct 122793 TCCAGTTGTTTACCAGCGAAAATCAACCTCTGTTGGTCCGGAGGAATGCCTTCCTTGTCC 122852 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| ||||| | || | ||| |||||| ||| || || | ||| ||||| Sbjct 122853 TGGATTTTGGACTTGACGTTGTCGATAGTATCAGAAGATTCGACCTCCAAAGTAATAGTC 122912 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | || || || || || ||||| Sbjct 122913 TTACCAGTCAGTGTCTTGACGAAAATTTGCAT 122944 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| ||||| ||||| || ||||| ||||||||||| ||||||| | || | | ||| Sbjct 121738 CAGGACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCCGACAGCGTTCTACCATC 121797 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||||||| || ||| | |||||||| || || || || |||||||| || ||||| Sbjct 121798 TTCCAGTTGTTTCCCTGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTGTC 121857 Query 29694 TTG 29696 || Sbjct 121858 CTG 121860 >seq19 Length=306686 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || | ||||| || ||||| ||||| || || | Sbjct 8894 CCACCTCTCAATCTCAAGACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 8835 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || | ||| || |||||| | ||||||||||| || || || ||| Sbjct 8834 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 8775 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | |||||| | || | ||||| ||| ||| || Sbjct 8774 ATACCTTCCTTGTCTTG-AATCTTAGACTTGACATTGTCAATGGTGTCTGAAGATTCAAC 8716 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||| || ||||| || || ||||| || || || || || ||||| || Sbjct 8715 TTCAAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218946477614