Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq54 123 6e-23 seq5 104 6e-17 seq4 95.1 3e-14 seq35 91.5 3e-13 >seq54 Length=422976 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| ||||| ||||| | ||||| || || ||||||||||||||||||||| Sbjct 195639 GATAATGATCCAGTTCTATTCAACCGTCAACCTTCGCTTCATAAAATGTCTATGATGGCT 195580 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 |||| ||| ||||| | || ||| ||||| |||| ||| | || | | || Sbjct 195579 CATAGAGTGAAAGT-TATTCCATATTCTACATTCAGATTGAATTTGTCTGTCACTTCTCC 195521 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 ||||| || ||||||||||| |||||||||||| | ||||| |||||||| ||| || Sbjct 195520 ATATAACGCCGATTTTGATGGTGATGAAATGAATCTTCATGTTCCTCAATCTGAGGAGAC 195461 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | ||| |||| | ||||| |||| Sbjct 195460 AAGAGCGGAACTATCCCAGTTATGTGCTGT 195431 >seq5 Length=350035 Score = 104 bits (114), Expect = 6e-17 Identities = 262/398 (66%), Gaps = 3/398 (1%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || ||||||| || || | | || || || || || || ||||||||||| || Sbjct 95285 CAAATGTCTTCTTGTTTCCTGATTGCCATGAAGGACGACTCCATCGAAGGTATTTACGAC 95344 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 || | ||||| ||| | ||||| || | | || || ||||| |||| | | Sbjct 95345 ACTTTGAAAGAGTGTGCCATGATTTCCAAGACTGCAGGTGGTGTTGGTCTTCATATCAAC 95404 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTT 110690 ||||||| || | ||| | |||| ||| | || ||| |||||| ||| | || Sbjct 95405 AATATTCGTTCCACAGGCTCTTATATTGCAGGTACCAACGGTACTTCAAATGGGTTGATT 95464 Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGA 110747 || ||| | | || ||||| |||||||| || ||| | ||||||||| |||||| Sbjct 95465 CCCATGATCCGTGTATTCAATAACACTGCACGTTACGTGGACCAAGGTGGTAACAAGAGA 95524 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || | ||||| | | | || || |||||| |||| || || || || | || Sbjct 95525 CCCGGTGCCTTTGCCCTTTTCTTGGAGCCATGGCATGCAGACATCTTCGACTTTGTTGAT 95584 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGG 110867 | | |||| ||| || |||||| | ||| | ||||| || ||| | ||| Sbjct 95585 ATCAGAAAAACTCATGGTAAGGAAGAAATTCGTGCAAGAGATTTGTTCCCTGCCCTATGG 95644 Query 110868 ATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 ||| | ||| | |||||||| ||||| |||| |||| Sbjct 95645 ATTCCTGATCTTTTCATGAAGCGTGTCGAAGAGGATGG 95682 >seq4 Length=66942 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/205 (72%), Gaps = 14/205 (7%) Strand=Plus/Plus Query 113242 TGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTCGTAATTGATATGGCTG 113301 |||||||| | | ||||||| ||||||||||| ||| | ||| | ||||| | Sbjct 60861 TGAAAGATTTGTATAAGACTGTTTGGGAAATTTCACAAAAGACTATCATTAACATGGCAG 60920 Query 113302 CAGATCGTGGCAAGTTTA--TCGATCAATCTCAGTCGATGAACTTATTTATGCCGGACAC 113359 | || |||| | ||||| |||||||||| || || |||| ||||| ||| | | | Sbjct 60921 CCGACCGTGCC--GTTTACATCGATCAATCCCATTCTTTGAATTTATTCTTGCGTGCCCC 60978 Query 113360 CTCACCA--GATAAGGTGACA--TCTGCTCTATTT-TACGGCTGGAAAAAAGGTTTAAAA 113414 |||| | |||| | ||| | ||| |||| ||||| ||||| |||||| |||| Sbjct 60979 A--ACCATGGGTAAGCTAACAAGTATGC---ATTTCTACGGTTGGAAGAAAGGTCTAAAG 61033 Query 113415 ACAGGTATGTATTATTTGCGAACAC 113439 || ||||||||||||||| |||||| Sbjct 61034 ACCGGTATGTATTATTTGAGAACAC 61058 >seq35 Length=412398 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 167616 GCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCA 167675 ||||| | || || ||||| || |||||||| ||||||||||| | || || | Sbjct 229997 GCAGCTAGAGGCAGAGTGTTGAAGGTGTCGATGAACGTTTTCCAGATTCTGATATTACAA 229938 Query 167676 CGTCGTTTGCATTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTT 167735 |||||||| |||||||| ||||| ||||| |||||| | || ||||||||||| || Sbjct 229937 CGTCGTTTACATTCATCATAAAATCCATAAACTCTTGTTACATTGGCACATTCGTGGTTA 229878 Query 167736 CCTCTTAA 167743 ||||| || Sbjct 229877 CCTCTCAA 229870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811978873894