Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq27 89.7 5e-13 seq26 89.7 5e-13 seq13 89.7 5e-13 seq17 87.8 2e-12 >seq27 Length=203299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 110710 GTGCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACG-T 110768 || ||||| | || | ||| ||||| |||||| ||| ||||| ||||| || || | Sbjct 141330 GTTCTCGACCAAGTTTTCGTTGACGATACCGTCGGAGGCGGCGAAGAAGGCAAGCACTCT 141271 Query 110769 GTTTAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGG 110828 | | ||| ||||| ||| || ||||||| | | ||||||||||| | | |||||||| Sbjct 141270 GGAGATGAA-GAATCTTTCGTTTTCGTTCATTCTGTTGTTCCAGTCGTGGATGTCCTTGG 141212 Query 110829 ACATGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAA 110888 ||| |||||| || ||| | ||||| | | | || |||||||||||||| | Sbjct 141211 ACAAGTCGATTTCCTCGGCAGTCCAGAAGGAGGCCTCGGCACGCTTGTACGATTGCC--A 141154 Query 110889 GATCT 110893 ||||| Sbjct 141153 GATCT 141149 >seq26 Length=324517 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 || || || || || || || || | ||||| | ||||| ||| | || || || Sbjct 286083 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 286024 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || ||| || ||| || ||||| ||||| || || || || |||||| | Sbjct 286023 GACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATTG 285964 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| ||| ||||| ||||||| Sbjct 285963 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTC--CGACTACAACATTCAAA 285906 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||| | |||||||| || ||||||||||| || Sbjct 285905 AGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 285866 >seq13 Length=204060 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| ||||| || || || || | ||||| | ||||| ||| | || ||||| Sbjct 46709 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 46768 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || ||| ||| || || || ||||| || || || || |||||| | Sbjct 46769 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 46828 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| | | ||||| || |||| Sbjct 46829 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTG--ACTACAACATCCAAA 46886 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | |||||||| | |||||||| || ||||||||||| || Sbjct 46887 AGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGG 46926 >seq17 Length=149906 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 ||||| ||| |||||| | || || || ||| | || || || | || || | || | Sbjct 122955 AATTAGACACTATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGG 122896 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 ||||| | ||||||||||| | || || ||||| || || || || || | Sbjct 122895 TCGAATCTTCTGATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTC 122836 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCA 25343 | || || || || || | |||| || || |||||||| ||||| | ||||| | Sbjct 122835 CTCCGGACCAACAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTAT 122776 Query 25344 GCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| |||||||| |||| || || |||| | ||||| || Sbjct 122775 CGGATTACAACATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 122718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094099561280