Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 224 1e-53 >seq4 Length=66942 Score = 224 bits (248), Expect = 1e-53 Identities = 907/1405 (65%), Gaps = 44/1405 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | || |||||| || || || || | ||| || || || | ||||| Sbjct 60709 GTACATGTTGGAAGTAACTGGTTCGAAACACTCGTTGTAACCTAAAATCTGGGAAGTGGA 60650 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATG-CG 110823 || || ||||| |||||||| ||||| ||| | || ||| | || | ||||| | Sbjct 60649 TGCAGTAGGCATAGGTGCCATGGTCAAAGA--GTTTCTAACACCATGCTTCATGATGTCA 60592 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAAC 110881 || || | | |||||| || | | | | | ||||| | | |||||||||| || Sbjct 60591 TTTCTCAA-AGTATCCCAATCCCACAT-ACCGTAAGGTTTTTCGT-CCCACATGTCGAAT 60535 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 ||||| | ||||| || || ||||| || | |||||||| || | || | || | Sbjct 60534 TGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGGGCCATCTCTTTGA 60475 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 || | ||||| || |||| ||| || || ||||||||||||||||| | ||| Sbjct 60474 GCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAAGATTTGTATATTT 60415 Query 111002 A-TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 | | | | ||||| || || || |||| | || |||| || || || || | Sbjct 60414 AGTAAGCGT-GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATGAAAGTGTCAGCCAA 60356 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 |||||| ||||||||| |||| || ||||||| ||||||||| ||| || ||| || Sbjct 60355 ACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTTCTTGCTTCCTCGAC 60296 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| | || | |||||| || ||||| || || | || || | ||||| Sbjct 60295 AGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATAACTTTAGAAATTTC 60236 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA----TTGACATACTT-- 111228 ||| || |||| | | | | || ||| |||||| || ||| | Sbjct 60235 ATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGATGTTTCAATAAATGC 60176 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| | || | || ||||| || |||||||| |||||||| | | | ||| || | Sbjct 60175 TGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGAGCGGAGTATTCAAC 60116 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 |||||| || ||||| || ||| || ||||| ||||||||||| ||| | Sbjct 60115 AATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTTTGGTTGGATTTCCT 60056 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||| || ||||||||||| | | |||| || || || ||||| |||| || | || Sbjct 60055 GTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTTTGTGCTTCCAATAT 59996 Query 111409 AGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACT 111467 || | ||| || | | | || | || | || | || || || ||||| Sbjct 59995 AGAGTACCACAATTTTTGGGCCTTG----ATAGTCTTACCACGGCCTTCTTTTTCGTAAC 59940 Query 111468 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC-TTGTCT 111526 || || ||||||||||| || ||||| ||| | ||||| ||| ||| Sbjct 59939 GGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTAAGCCTGGAGCCGATGT-A 59881 Query 111527 GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 111586 ||| |||| | || ||| || ||| || || |||||||||||||| || |||| | Sbjct 59880 GGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCGGGAACC 59821 Query 111587 CACAGGGATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 111645 || || | || || | |||||| ||| || ||||| | ||| || || || | Sbjct 59820 CATAGAGCTGGGAATAAATCTCTCGCACGGA-TTTCTTCCTTACCGTGATTCTTTCTAAT 59762 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC--AAGATAG----ACTGCGATAGA 111699 || | ||| || | |||||| |||||||||||||| || |||| | || || Sbjct 59761 GTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGG 59702 Query 111700 TCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 || ||| | ||| | || | ||||| || || ||| ||| || || || | ||| Sbjct 59701 TCTCTTGTTA---CCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCAT 59645 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCAC 111819 ||||| | || | || || || || || ||| ||| | || | | Sbjct 59644 AGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAAT 59585 Query 111820 ATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAG 111879 | || || || | |||||||| ||||| || || || ||||| ||| | | Sbjct 59584 GTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAA 59525 Query 111880 AGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACAT 111939 ||| | ||||| || | || || || ||||| | || | ||||| || |||||| Sbjct 59524 AGTGTCGTAGATGCCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACAT 59465 Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT- 111998 || || ||||||||||||| ||||| | ||||| | |||||| | || || || Sbjct 59464 TTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGT-AAAGTATTTTA 59406 Query 111999 GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTG 112058 |||||||| || || || || | | | ||||||| || ||||| || || | | Sbjct 59405 GGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACCGTGAATACCTAAGG 59346 Query 112059 CGACCCGCATGAACATGTACTGTGG 112083 |||| | ||||| | || ||||| Sbjct 59345 CGACTCTCATGATTAAGTGTTGTGG 59321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031576078400