Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 185 1e-41 seq2 114 2e-20 >seq4 Length=66942 Score = 185 bits (204), Expect = 1e-41 Identities = 777/1209 (64%), Gaps = 36/1209 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || || || || |||||||| || ||||| || || | || || || ||||| Sbjct 60547 CCACATGTCGAATTGAAGTATACCTTGAGAAGCTGGAGAGCCTTGGAAGGTTTCGTATGG 60488 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 ||| || | || | || | || || | || || || ||||| |||||||| Sbjct 60487 GCCATCTCTTTGAGCTAGCTCACAAGAGGCTTCCATGGAAGCATGGTACATGGTTTCAAA 60428 Query 118463 AATGCGAGCATTCATT--GCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520 || | ||| | | || | || || ||||| || || | | || |||| || Sbjct 60427 GATTTGTATATTTAGTAAGCGT--GCTTCTTCGGAGTCGAATGGTAAACGCAACAACATG 60370 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || || || | |||||||||||| | |||| || | |||||||||||||| | Sbjct 60369 AAAGTGTCAGCCAAACCTTGGACACCCAAAGCAATCGGCCTGTGTCTCATATTAGATCTT 60310 Query 118581 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 118640 | || ||| || |||||| | || | || ||||| | |||| || |||| | Sbjct 60309 CTTGCTTCCTCGACAGGATAATAGTTACGGTCAATAACGTTGTTTAAGTTACGAGTGATA 60250 Query 118641 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA--- 118691 || || | |||||||| ||||||| | | | | | | ||| | ||||| Sbjct 60249 ACTTTAGAAATTTCATGTAGCTTTTTGAAGTTATATGTAGAAGTTTTGCCGTCTTCAGAT 60190 Query 118692 -TTGACATACTTA--GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || ||| | || | || | || |||| ||||| |||| |||||||| | Sbjct 60189 GTTTCAATAAATGCTGGCAAAGCAACAGAAGCCAAGTTACAAACAGCAGTCTCATCTGGA 60130 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 | | ||| || | |||||| ||||||||| || ||| || |||||||||||| Sbjct 60129 GCGGAGTATTCAACAATTTCACAGCACAAGTTAGACGACTTGATAACACCCAAGTTCTTT 60070 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || || || ||||||| ||||||||||||| | | || || || || |||||| Sbjct 60069 TGGTTGGATTTCCTGTTACAAGCATCCTTGTAAACAACAAAGGGTGTACCAGTTTCCGTT 60010 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATC---GGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 || | | | |||| | ||| | | ||| || | | ||| || | || Sbjct 60009 TGTGCTTCCAATATAGAGTACCACAATTTTTGGGC--CTTG-ATAGTC---TTACCACGG 59956 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG--GCCTCTGAGA 118983 || |||| ||||| || || ||||||||||| || ||||| | | | || | | Sbjct 59955 CCTTCTTTTTCGTAACGGGTATATAGGGCTTCAAATTCGTCACCGTAGCAGTCACTTA-A 59897 Query 118984 GCCCTGGTGCCTTATCTGGGC-AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 119042 ||| ||| ||| || | || |||| | || ||| || || || || |||||| Sbjct 59896 GCC-TGGAGCCG-ATGTAGGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTC 59839 Query 119043 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 119102 ||||| || || || | ||| || || | ||| | ||| | || |||||| | Sbjct 59838 ATGAAAAGATCGGGAACCCATAGAGCTGGGAATAAATCTCTCGCACGGATTTCTTCCTTA 59779 Query 119103 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 119162 || ||||| | | || | ||||| | |||||| |||||||| || |||| || Sbjct 59778 CCGTGATTCTTTCTAATGTCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATAT 59719 Query 119163 ACCGCGATTG-ACCCCTTACGACG--ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 | || | | ||| | | |||| |||||| ||||| | |||||| ||| Sbjct 59718 AGAGCAAAGGCACCAGGTCTCTTGTTACCACCCTGGTCAACATAACGGGCAGTGTTGTTG 59659 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGAC 119279 || ||||| | ||| ||||| | || | || || || || || ||| ||| Sbjct 59658 AAGACACGGATCATAGGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAG 59599 Query 119280 TTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGC 119339 | || | | | ||| || || | ||||||||| || || || || || Sbjct 59598 CCGGTTGCACGAATGTTGTGAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAA 59539 Query 119340 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 119399 || || ||| | | | || ||||||| || || || || ||| |||| |||| | ||| Sbjct 59538 GCACATTCCTTCAAAGTGTCGTAGATGCCTTCAATGGAATCATCCTTCATTGCAACTAGG 59479 Query 119400 AAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGG 119459 || ||| |||||||||||| | ||||||||||||||||| | |||||| | ||||| Sbjct 59478 AAACAGGAGGACATTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGA 59419 Query 119460 ATGAACATACCTT-GGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 | || || || |||||||| || ||||| || | |||| ||||| || || Sbjct 59418 GTAAAG-TATTTTAGGGACATCAAGTTATAGGTTTCTAGAGCGGCCTCAATGTTATCACC 59360 Query 119519 GTGAATACC 119527 ||||||||| Sbjct 59359 GTGAATACC 59351 >seq2 Length=799714 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 167937 CCAGTAGGTGTCTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATC 167996 ||||| ||| ||||||| | | ||||||||||| || || || ||||| | ||||| Sbjct 711838 CCAGTCGGTACCTACGGTAGAATCGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATT 711897 Query 167997 CAAGTTGGTGCGGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTC 168056 ||| ||||| |||||||| || |||||| || ||||||||||| || | | || Sbjct 711898 CAAACGGGTGCTGGTGTTGTCGACAGAGACTACACCGGTGAAGTCAAGGTTATCTTATTT 711957 Query 168057 AATCACGGGCACACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAACTCATCTTA 168116 ||||| ||| | |||||| |||||||| || ||||| ||||| ||| | ||||| Sbjct 711958 AATCATTCGCAGAAGGATTTCGCGATCAAAAAAGGTGATCGTATCGCCCAATTGATCTTG 712017 Query 168117 GAGAGG 168122 || ||| Sbjct 712018 GAAAGG 712023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434782556240