Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07]
54 sequences; 11,543,596 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4 176 5e-39
seq5 131 2e-25
seq27 118 1e-21
>seq4
Length=66942
Score = 176 bits (194), Expect = 5e-39
Identities = 349/509 (69%), Gaps = 6/509 (1%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251
||||| | |||||||| ||||| |||||||| || | | || || || || ||
Sbjct 59334 TCATGAGAGTCGCCTTAGGTATTCACGGTGATAACATTGAGGCCGCTCTA-GAAACCTAT 59392
Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311
|||| ||| || ||| |||||||| |||||| | ||||| | ||||||||||||||
Sbjct 59393 AACTTGATGTCCCTAAAATACTTTACTCACGCCTCTCCAACTTTATTCAACGCTGGTACA 59452
Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
| ||||| ||||| ||| ||||| || || ||||||||||| || || || |||
Sbjct 59453 CCAAAGCCTCAAATGTCCTCCTGTTTCCTAGTTGCAATGAAGGATGATTCCATTGAAGGC 59512
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|||||||| || | ||||| ||||| || ||||| | |||||||| ||| |
Sbjct 59513 ATCTACGACACTTTGAAGGAATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTA 59572
Query 53432 CACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | || ||| | ||||| | |||| | || || |||||||| | |
Sbjct 59573 CA-TATTCACAACATTCGTGCAACCGGCTCTTACATTGCTGGTACGAACGGGACTTCTAA 59631
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| | | |||||| |||| |||||||||||||| ||||| || || ||||||||||
Sbjct 59632 CGGGTTAATTCCTATGATCCGTGTCTTCAACAACACTGCCCGTTATGTTGACCAGGGTGG 59691
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
| ||| | || | || || | || | ||||| |||||||| || || | ||
Sbjct 59692 TAACAAGAGACCTGGTGCCTTTGCTCTATATTTGGAGCCATGGCACGCTGATATCTTCGA 59751
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669
|| |||| | | |||||| ||| | ||||| || || ||| | || | ||
Sbjct 59752 CTTCATCGACATTAGAAAGAATCACGGTAAGGAAGAAATCCG-TGCGAGAGATTTATTCC 59810
Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATG 53698
||||||| ||| |||| || || ||||||
Sbjct 59811 CAGCTCTATGGGTTCCCGATCTTTTCATG 59839
>seq5
Length=350035
Score = 131 bits (144), Expect = 2e-25
Identities = 341/517 (66%), Gaps = 10/517 (2%)
Strand=Plus/Plus
Query 53187 ATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTG--- 53243
|||| ||||||| || ||| |||||||||||||| |||| || |||||||
Sbjct 95151 ATCTGGTCATGCGTGTGGCCCTGGGTATCCACGGTAGCGAC----ATCGAGTCCGTGCTG 95206
Query 53244 -AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302
|||| ||| |||| ||| | ||||| || ||||| | || || || || ||
Sbjct 95207 AAGACTTACAACTTGATGTCATTGAGATACTTCACTCACGCTTCCCCCACTCTATTTAAT 95266
Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362
|| |||||| |||||||| ||||| || |||||| | || |||||||| |||||
Sbjct 95267 GCCGGTACGCCACACCCTCAAATGTCTTCTTGTTTCCTGATTGCCATGAAGGACGACTCC 95326
Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422
||||| || || ||||| || | || ||||||||| || |||||| | ||||||
Sbjct 95327 ATCGAAGGTATTTACGACACTTTGAAAGAGTGTGCCATGATTTCCAAGACTGCAGGTGGT 95386
Query 53423 ATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGC 53482
| ||| | || | || | ||| | | ||| | || || || |||||
Sbjct 95387 GTTGGTCTTCATATCAACAATATTCGTTCCACAGGCTCTTATATTGCAGGTACCAACGGT 95446
Query 53483 GTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAAC 53542
| |||| | | || ||| |||| || ||||| ||||| || || ||||| ||
Sbjct 95447 ACTTCAAATGGGTTGATTCCCATGATCCGTGTATTCAATAACACTGCACGTTACGTGGAC 95506
Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602
|| |||||| ||| | || | || ||| | | | | ||||| ||||| || |||
Sbjct 95507 CAAGGTGGTAACAAGAGACCCGGTGCCTTTGCCCTTTTCTTGGAGCCATGGCATGCAGAC 95566
Query 53603 ATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGA 53661
|| | || ||| | || | | | ||| ||| | ||||| || || ||| | ||
Sbjct 95567 ATCTTCGACTTTGTTGATATCAGAAAAACTCATGGTAAGGAAGAAATTCG-TGCAAGAGA 95625
Query 53662 CCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698
|||| | || || |||||||| || || ||||||
Sbjct 95626 TTTGTTCCCTGCCCTATGGATTCCTGATCTTTTCATG 95662
>seq27
Length=203299
Score = 118 bits (130), Expect = 1e-21
Identities = 296/438 (68%), Gaps = 15/438 (3%)
Strand=Plus/Minus
Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809
|||||| || ||| | ||||| ||||||| |||| ||| || || || | | ||
Sbjct 141705 GGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAGAAGGTCAAACC 141646
Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869
||||| | || | ||||||||||| ||||||| |||||| || |||||||
Sbjct 141645 GGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCGGAAAAGAAGAC 141586
Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----A 74925
||||||| | || || ||||| || | || ||||| | ||||||| ||| |
Sbjct 141585 ACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACCGAACAGGGCATCGG-CGTCCTGGA 141527
Query 74926 TCCAAGTCTGAGCCCATTCAG-CTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984
|||| | | |||||||| | ||| ||| || | |||| || ||||| || | |
Sbjct 141526 TCCATCTAAGGGCCCATTCGGCCTTCTCG-CAGATTTCTGGGATGGTGTCGATGGCGTTG 141468
Query 74985 AAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042
|| | | || || ||| ||| ||| ||||||| | |||| |||| | ||||| |
Sbjct 141467 AACAAGAACTCGCTTTC-CTT-GGGGTCCTTGATGTAGGTGTCGATCAACAAGGAGTAGG 141410
Query 75043 TCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100
| || || || || |||| ||| ||| |||| || |||||||| | ||||| |
Sbjct 141409 TTTCGGAGTGGATGTTCTCGATTG--CGATCTGGAACCCGTAGAAACTCTTGGCCTCCGG 141352
Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160
||||| || || | || || ||| | | | || || ||||||| ||||| |||||
Sbjct 141351 GATCTGGACCTCGGTGGAGAAGTTCTCGACCAAGTTTTCGTTGACGATACCGTCGGAGGC 141292
Query 75161 GGCGAAAAAAGCCAGTAC 75178
|||||| || || || ||
Sbjct 141291 GGCGAAGAAGGCAAGCAC 141274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215630629200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |