Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 176 5e-39 seq5 131 2e-25 seq27 118 1e-21 >seq4 Length=66942 Score = 176 bits (194), Expect = 5e-39 Identities = 349/509 (69%), Gaps = 6/509 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||| | |||||||| ||||| |||||||| || | | || || || || || Sbjct 59334 TCATGAGAGTCGCCTTAGGTATTCACGGTGATAACATTGAGGCCGCTCTA-GAAACCTAT 59392 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 |||| ||| || ||| |||||||| |||||| | ||||| | |||||||||||||| Sbjct 59393 AACTTGATGTCCCTAAAATACTTTACTCACGCCTCTCCAACTTTATTCAACGCTGGTACA 59452 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | ||||| ||||| ||| ||||| || || ||||||||||| || || || ||| Sbjct 59453 CCAAAGCCTCAAATGTCCTCCTGTTTCCTAGTTGCAATGAAGGATGATTCCATTGAAGGC 59512 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || | ||||| ||||| || ||||| | |||||||| ||| | Sbjct 59513 ATCTACGACACTTTGAAGGAATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTA 59572 Query 53432 CACTGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | || ||| | ||||| | |||| | || || |||||||| | | Sbjct 59573 CA-TATTCACAACATTCGTGCAACCGGCTCTTACATTGCTGGTACGAACGGGACTTCTAA 59631 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || | | |||||| |||| |||||||||||||| ||||| || || |||||||||| Sbjct 59632 CGGGTTAATTCCTATGATCCGTGTCTTCAACAACACTGCCCGTTATGTTGACCAGGGTGG 59691 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 | ||| | || | || || | || | ||||| |||||||| || || | || Sbjct 59692 TAACAAGAGACCTGGTGCCTTTGCTCTATATTTGGAGCCATGGCACGCTGATATCTTCGA 59751 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTA 53669 || |||| | | |||||| ||| | ||||| || || ||| | || | || Sbjct 59752 CTTCATCGACATTAGAAAGAATCACGGTAAGGAAGAAATCCG-TGCGAGAGATTTATTCC 59810 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATG 53698 ||||||| ||| |||| || || |||||| Sbjct 59811 CAGCTCTATGGGTTCCCGATCTTTTCATG 59839 >seq5 Length=350035 Score = 131 bits (144), Expect = 2e-25 Identities = 341/517 (66%), Gaps = 10/517 (2%) Strand=Plus/Plus Query 53187 ATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTG--- 53243 |||| ||||||| || ||| |||||||||||||| |||| || ||||||| Sbjct 95151 ATCTGGTCATGCGTGTGGCCCTGGGTATCCACGGTAGCGAC----ATCGAGTCCGTGCTG 95206 Query 53244 -AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 |||| ||| |||| ||| | ||||| || ||||| | || || || || || Sbjct 95207 AAGACTTACAACTTGATGTCATTGAGATACTTCACTCACGCTTCCCCCACTCTATTTAAT 95266 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || |||||| |||||||| ||||| || |||||| | || |||||||| ||||| Sbjct 95267 GCCGGTACGCCACACCCTCAAATGTCTTCTTGTTTCCTGATTGCCATGAAGGACGACTCC 95326 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| || || ||||| || | || ||||||||| || |||||| | |||||| Sbjct 95327 ATCGAAGGTATTTACGACACTTTGAAAGAGTGTGCCATGATTTCCAAGACTGCAGGTGGT 95386 Query 53423 ATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGC 53482 | ||| | || | || | ||| | | ||| | || || || ||||| Sbjct 95387 GTTGGTCTTCATATCAACAATATTCGTTCCACAGGCTCTTATATTGCAGGTACCAACGGT 95446 Query 53483 GTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAAC 53542 | |||| | | || ||| |||| || ||||| ||||| || || ||||| || Sbjct 95447 ACTTCAAATGGGTTGATTCCCATGATCCGTGTATTCAATAACACTGCACGTTACGTGGAC 95506 Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 || |||||| ||| | || | || ||| | | | | ||||| ||||| || ||| Sbjct 95507 CAAGGTGGTAACAAGAGACCCGGTGCCTTTGCCCTTTTCTTGGAGCCATGGCATGCAGAC 95566 Query 53603 ATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGA 53661 || | || ||| | || | | | ||| ||| | ||||| || || ||| | || Sbjct 95567 ATCTTCGACTTTGTTGATATCAGAAAAACTCATGGTAAGGAAGAAATTCG-TGCAAGAGA 95625 Query 53662 CCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 |||| | || || |||||||| || || |||||| Sbjct 95626 TTTGTTCCCTGCCCTATGGATTCCTGATCTTTTCATG 95662 >seq27 Length=203299 Score = 118 bits (130), Expect = 1e-21 Identities = 296/438 (68%), Gaps = 15/438 (3%) Strand=Plus/Minus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | ||||| ||||||| |||| ||| || || || | | || Sbjct 141705 GGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAGATCAGTTCGTTGGAGAAGGTCAAACC 141646 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGAT 74869 ||||| | || | ||||||||||| ||||||| |||||| || ||||||| Sbjct 141645 GGGCATCATACCTCTTTTCTTCAACCAGAAGATGGAGGCGAAGGACCCGGAAAAGAAGAC 141586 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----A 74925 ||||||| | || || ||||| || | || ||||| | ||||||| ||| | Sbjct 141585 ACCTTCGATGGAGGCGAACGCGACCAGTCTTTCACCGAACAGGGCATCGG-CGTCCTGGA 141527 Query 74926 TCCAAGTCTGAGCCCATTCAG-CTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGG 74984 |||| | | |||||||| | ||| ||| || | |||| || ||||| || | | Sbjct 141526 TCCATCTAAGGGCCCATTCGGCCTTCTCG-CAGATTTCTGGGATGGTGTCGATGGCGTTG 141468 Query 74985 AAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 || | | || || ||| ||| ||| ||||||| | |||| |||| | ||||| | Sbjct 141467 AACAAGAACTCGCTTTC-CTT-GGGGTCCTTGATGTAGGTGTCGATCAACAAGGAGTAGG 141410 Query 75043 TCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 | || || || || |||| ||| ||| |||| || |||||||| | ||||| | Sbjct 141409 TTTCGGAGTGGATGTTCTCGATTG--CGATCTGGAACCCGTAGAAACTCTTGGCCTCCGG 141352 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 ||||| || || | || || ||| | | | || || ||||||| ||||| ||||| Sbjct 141351 GATCTGGACCTCGGTGGAGAAGTTCTCGACCAAGTTTTCGTTGACGATACCGTCGGAGGC 141292 Query 75161 GGCGAAAAAAGCCAGTAC 75178 |||||| || || || || Sbjct 141291 GGCGAAGAAGGCAAGCAC 141274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215630629200