Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17 150 2e-31 seq5 147 2e-30 seq19 136 5e-27 seq13 129 7e-25 seq26 113 5e-20 seq4 95.1 1e-14 >seq17 Length=149906 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || || |||||||||||| | ||||| || || | Sbjct 122944 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 122885 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 122884 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 122825 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||| ||||| || || | | | || ||| | || || || Sbjct 122824 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 122765 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | |||||||||||||||||||| Sbjct 122764 ATTCAAAAGGAATCCACTCTTCA 122742 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||||||||| || |||||||||||||| ||| | | |||||||| || || Sbjct 121866 AAGATCCAGGACAAGGAAGGTATTCCTCCAGACCAACAGAGATTGATTTTTGCAGGGAAA 121807 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| || |||| | | || || | || || || | ||||||||||| || ||||| Sbjct 121806 CAACTGGAAGATGGTAGAACGCTGTCGGATTACAACATTCAAAAGGAATCTACCCTTCAC 121747 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| || | || | ||||| Sbjct 121746 TTGGTCCTGAGACTAAGAGGTGG 121724 >seq5 Length=350035 Score = 147 bits (162), Expect = 2e-30 Identities = 524/803 (65%), Gaps = 32/803 (4%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 ||||||||||||| |||| ||| || || || || ||||||| ||||| |||||| | Sbjct 95945 ACTCGACGATTTCGCAACACAGATTCGACGATTTGATAGTACCCAAGTTTTGCTGGTTGG 95886 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| ||| |||||||| ||||| |||| | || |||||||| || |||| || Sbjct 95885 TCTTTCTGTTACAAGCGTCTTTGTAAACCATGAATGGCGTACCGGTTTCTGTTTGTG-CT 95827 Query 81068 TG-AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGC--GGAATTTGCCTTCGG 81124 || | |||||||| ||| | | | ||||||| || | || ||||| Sbjct 95826 TGTAAGATGGCGTACCACACTTTTTGGGCCTTGATGGTTTTACCACGA-----CCTTCTC 95772 Query 81125 CCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCT-GG 81182 | || || ||| ||| || ||||| | |||| || || | || || Sbjct 95771 TTTCGTAACGGGTGTATAGC-TCTTCGAATTCTTCACCCCAAACGTCGTCCAAACCTGGG 95713 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 ||| || | | | || ||| |||| | || | || ||| |||||||||| Sbjct 95712 GCAGAACTTGGTGAAAAT-AGGGTCCAGGCCCCATCCTCTTCGACACGCTTCATGAAAAG 95654 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||||| ||||| ||||| | ||||| || | ||| || || || | ||| || Sbjct 95653 ATCAGGAATCCATAGGGCAGGGAACAAATCTCTTGCA-CGAATTTCTTCCTTACCATGAG 95595 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | | | || | |||||| | |||||| |||||||||||||||| | | ||| | Sbjct 95594 TTTTTCTGATATCAACAAAGTCGAAGATGTCTGCATGCCATGGCTCCAAGAAAAGGGCAA 95535 Query 81362 TCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | || | |||| | ||||| |||| |||||||| ||||| || |||| Sbjct 95534 AGGCACCGGGTCTCTTGTTA---CCACCTTGGTCCACGTAACGTGCAGTGTTATTGAATA 95478 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 |||| | ||| || || | |||| ||| |||||| ||||| | ||| || || Sbjct 95477 CACGGATCATGGGAATCAACCCATTTGAAGTACCGTTGGTACCTGCAATATAAGAGCCTG 95418 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 ||| || | ||| |||| |||||| | ||||||| ||| |||||| |||| Sbjct 95417 TGGAACGAATATTGTTGATATGAAGACCAACACCACCTGCAGTCTTGGAAATCATGGCAC 95358 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || |||| || || ||||| || |||||| || | |||||| ||| || ||||| Sbjct 95357 ACTCTTTCAAAGTGTCGTAAATACCTTCGATGGAGTCGTCCTTCATGGCAATCAGGAAAC 95298 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 | ||||| |||||| | | |||||||| || || || |||| |||||| ||| Sbjct 95297 AAGAAGACATTTGAGGGTGTGGCGTACCGGCATTAAATAGAGTGGGGGAAGCGTGAGTGA 95238 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGA----ATATCGTCACCG 81711 | || | |||||||| || || || ||| | || ||| || ||| |||| Sbjct 95237 AGTATCTCAATGACATCAAGTTGTAAGT---CTTCA-GCACGGACTCGATGTCGCTACCG 95182 Query 81712 TGAATACCGATAGCTACACGCAT 81734 || ||||| | || |||||||| Sbjct 95181 TGGATACCCAGGGCCACACGCAT 95159 >seq19 Length=306686 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| ||||||||||| ||||| ||||| || Sbjct 8668 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCTTCA 8727 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| |||| ||||| |||||||| || ||||| || ||||| Sbjct 8728 GACACCATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAA 8787 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||||||||||||| | || || | | || | | ||||| || Sbjct 8788 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACTACAAC 8847 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| |||||| | || | |||||| Sbjct 8848 ATCCAAAAGGAGTCCACTTTACACTTGGTCTTG 8880 >seq13 Length=204060 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 |||||||| || | || || ||||| || ||| | || ||||| || ||| | ||| Sbjct 46709 TTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 46768 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || ||||| |||||||| || || ||||| ||||| || | || Sbjct 46769 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGATTA 46828 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || ||||||||||||||| | || || | | | ||| | | ||||| || |||||||| Sbjct 46829 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAAAG 46888 Query 27595 GAATCCACTCTTCATCTAGTCTTG 27618 ||||||||| | ||| |||||||| Sbjct 46889 GAATCCACTTTACATTTAGTCTTG 46912 >seq26 Length=324517 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| | || || ||||| || ||||| || ||||| || ||| | ||| Sbjct 286084 CTTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCAT 286025 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | || | || ||||| ||||| || || || || || ||||| || | | Sbjct 286024 TGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATT 285965 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||||||| | || || | | | ||| | | ||||| || | ||||| Sbjct 285964 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAA 285905 Query 27594 GGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| | ||| |||||||| Sbjct 285904 GGAATCCACTTTACATTTAGTCTTG 285880 >seq4 Length=66942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 277/419 (66%), Gaps = 21/419 (5%) Strand=Plus/Minus Query 81313 TCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC----- 81366 |||| ||||| | ||| || || ||||||||||||| ||| | || | | || Sbjct 59760 TCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGT 59701 Query 81367 CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 | |||| | |||||||||| || ||||||||||| ||| || ||||| | |||| Sbjct 59700 CTCTTGTTA---CCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGATCATA 59644 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACC 81486 || || | || | || ||||||||||| | || || || | || || | Sbjct 59643 GGAATTAACCCGTTAGAAGTCCCGTTCGTACCAGCAATGTAAGAGCCGGTTGCACGAATG 59584 Query 81487 TTGCTGATTGAAAGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGGTTCA 81544 ||| || ||||| || ||||| | || ||| |||||| |||||| |||| Sbjct 59583 TTGTGAATATGTAGACCAATACCACC--AGCAGTTTTGGAAATCAAAGCACATTCCTTCA 59526 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || || || || || || ||| ||| | ||||| ||| | ||||||| |||| Sbjct 59525 AAGTGTCGTAGATGCCTTCAATGGAATCATCCTTCATTGCAACTAGGAAACAGGAGGACA 59466 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 | ||||| || || || || ||||| | ||||| | |||||| | || || | Sbjct 59465 TTTGAGGCTTTGGTGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAAGTA---TT 59409 Query 81665 TT---GACATCAGGTCATAGGTTTCCTTGA-CGCGTGGAATATCGTCACCGTGAATACC 81719 || ||||||| || |||||||| || || || ||| | |||||||||||||| Sbjct 59408 TTAGGGACATCAAGTTATAGGTTT-CTAGAGCGGCCTCAATGTTATCACCGTGAATACC 59351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310015040480