Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq19 93.3 3e-14 seq26 84.2 2e-11 seq13 84.2 2e-11 >seq19 Length=306686 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || ||| | || || || |||||| |||| || ||| Sbjct 8665 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTTGAAGTTGAATCT 8724 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || ||||| ||||| || || ||||| |||||| |||| | Sbjct 8725 TCAGACACCATTGACAAT--GTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTG 8782 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || || |||||||| |||| | | ||||| || | Sbjct 8783 ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCTGACT 8842 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| ||| |||||| || ||||| ||| | ||| | || || Sbjct 8843 ACAACATCCAAAAGGAGTCCACTTTACACTTGGTCTTGAGATTGAGAGGTGG 8894 >seq26 Length=324517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||| | || || ||||| || || |||||||| Sbjct 285999 GACAAAGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAA 285940 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | ||||||||| |||||||| ||||| || |||||| ||||| || ||| Sbjct 285939 GACGGTAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACATTTAGTCTTG 285880 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 285879 AGATTGAGAGGTGG 285866 >seq13 Length=204060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || || ||| | ||||| ||||| || || |||||||| Sbjct 46793 GACAAGGAAGGTATCCCTCCTGACCAACAAAGATTAATCTTTGCTGGTAAGCAATTGGAA 46852 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | |||||| || |||||||||||||| || |||||| ||||| || ||| Sbjct 46853 GACGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCCACTTTACATTTAGTCTTG 46912 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 46913 AGATTGAGAGGTGG 46926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862165798058