Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20uvarum_20[genbank_20GCA_5F002242715.1_202017-08-07] 54 sequences; 11,543,596 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq26 132 3e-26 seq13 125 5e-24 seq17 89.7 3e-13 >seq26 Length=324517 Score = 132 bits (146), Expect = 3e-26 Identities = 166/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679 |||||||| || | || || || || |||||||| |||||||| || | ||||| || Sbjct 286083 TTCGTTAAGACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAATCTTCTGACACCATT 286024 Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738 || ||| | ||| | || | || |||||||||||| | || || || ||||| | || Sbjct 286023 GACAATGTCAAATCCAAGA-TTCAAGACAAAGAAGGTATCCCACCTGACCAACAAAGATT 285965 Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798 || ||||| || || ||| ||||||||| | || || ||| |||||||| ||||| Sbjct 285964 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAACATTCAAAA 285905 Query 23799 AGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 || ||||| ||||||||||| || || ||| |||| || |||| Sbjct 285904 GGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTATCA 285861 >seq13 Length=204060 Score = 125 bits (138), Expect = 5e-24 Identities = 165/225 (73%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 23619 TTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGT 23678 ||| || ||||| | || || || || |||||| | |||||||| || | |||||| | Sbjct 46708 TTTTGTCAAAACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 46767 Query 23679 TGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTT 23737 ||| ||| | || |||| | || ||||| |||||| | || || || ||||| | | Sbjct 46768 TGACAATGTCAAGTCAAAGA-TTCAAGACAAGGAAGGTATCCCTCCTGACCAACAAAGAT 46826 Query 23738 TAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAA 23797 |||| ||||| || || ||| ||||||||| | || || || |||||||| |||| Sbjct 46827 TAATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATCCAAA 46886 Query 23798 AAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 | || ||||| ||||||||||| || || ||| |||| || |||| Sbjct 46887 AGGAATCCACTTTACATTTAGTCTTGAGATTGAGAGGTGGTATCA 46931 >seq17 Length=149906 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || || || || || || || || ||| | || || || || | Sbjct 122944 ATGCAAATTTTCGTCAAGACACTGACTGGTAAGACTATTACTTTGGAGGTCGAATCTTCT 122885 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || ||||| ||||| ||||| | || || || ||| Sbjct 122884 GATACTATCGACAACGTCAAGTCCAAAATCCAGGACAAGGAAGGCATTCCTCCGGACCAA 122825 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || || |||||||||||||||| | || || ||||||||| Sbjct 122824 CAGAGGTTGATTTTCGCTGGTAAACAACTGGAAGACGGTAGAACGCTATCGGATTACAAC 122765 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || ||||| | || || || ||||| | |||| || Sbjct 122764 ATTCAAAAGGAATCCACTCTTCACTTGGTCCTAAGGCTAAGAGGTGG 122718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009377547432