Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936155.1_202017- 01-05] 7 sequences; 19,567,216 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq3 87.8 2e-12 >seq1 Length=4889271 Score = 131 bits (144), Expect = 2e-25 Identities = 396/607 (65%), Gaps = 21/607 (3%) Strand=Plus/Minus Query 116615 TTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGG 116674 || |||||| | |||| || || |||| ||||||||||| || || || || |||||| Sbjct 3874065 TTTCCCATAAAGTACCATGAAATATGGCAAATGTACAAAAAAGCAGAAGCTTCTTTCTGG 3874006 Query 116675 ACCGTCGAGGAGGTGGACCTGTCCAAGGA----CACGAGCG--ACTGGGAGCGCTTGAAC 116728 |||| |||||| | || || ||||| || || | ||| || ||||| Sbjct 3874005 ACCGCCGAGGAAATTGATCTTGGTAAGGATTTGCATGATTGGAACTATAAG---TTGAAT 3873949 Query 116729 GACAACGAGCGCCATTTCAT--CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCA 116786 ||| || | |||||| | || ||||| || ||||| ||||| || |||| Sbjct 3873948 AGCAATGAACAGTTTTTCATTTCCAGA--GTGCTAGCATTTTTTGCCGCATCGGATGGCA 3873891 Query 116787 TCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGT 116846 |||| || |||||||| || || |||| || | || ||| | |||| || | Sbjct 3873890 TCGTTAATGAGAATCTTGTACAGAATTTCTCTACCCAAGTACAGATTCCCGAAGCCAAAT 3873831 Query 116847 GCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCA 116906 |||| || || ||||| || |||||||| || || || || | || || | | Sbjct 3873830 GCTTTTATGGTTTTCAAATAATGATGGAGAATGTTCATTCAGAGACATACTCTCTGTTGA 3873771 Query 116907 TCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG----TTTGTTGAACGCCATCGAG 116962 | || || || | | | | || || ||| ||| || || || || || Sbjct 3873770 TAGATACTTATATTCTGGATCCTGAACAGG----CCGAATTTTTATTTAATGCAATTGAT 3873715 Query 116963 ACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAG 117022 || || || ||| | ||||| || || || |||||||| | ||||| | | ||| Sbjct 3873714 ACAATTCCATGCATTAAAGAAAAAGCAGACTGGGCGCTTAGATGGATTGAAGATGAAGAC 3873655 Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 || || | || | | || || || || ||||| || || | || ||||| || Sbjct 3873654 GCTTTATTTGCTGAAAGATTAGTAGCATTTGCTGCCGTTGAAGGTATATTTTTTTCCGGT 3873595 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGC 117142 |||||| | |||||||||||||||||| | || || |||||||| || |||||| | Sbjct 3873594 TCTTTCGCTTCGATATTTTGGCTCAAGAAAAGAGGTCTTATGCCCGGTCTTACTTTCTCC 3873535 Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 || ||| | || | | || || ||||| ||| || |||||||||||| ||| | Sbjct 3873534 AATGAGTTGATTTGTCGCGATGAAGGTCTTCATACTGATTTTGCCTGTTTGTTGTATTCG 3873475 Query 117203 CATTTGG 117209 ||||||| Sbjct 3873474 CATTTGG 3873468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 381/594 (64%), Gaps = 15/594 (3%) Strand=Plus/Plus Query 116625 AATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGG 116684 |||| | || || |||| |||||||| ||||| || || || |||||||| | || | Sbjct 4012474 AATATCATGAAATATGGCAAATGTACAAGAAGGCTGAAGCTTCATTCTGGACTGCTGAAG 4012533 Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCC 116741 || | ||| || || || | | |||||| | | ||||| | |||||| | Sbjct 4012534 AGATCGACTTGAGTAAAGATATGCATGACTGGAATGACAAGTTGAATGCCAACGAAAGAT 4012593 Query 116742 ATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATC 116801 ||||| || ||| |||| || || || || || || || || ||||| || || Sbjct 4012594 ATTTCCTCTCTAGAGTGTTGGCTTTCTTTGCTGCTAGTGATGGTATTGTCAATGAAAACT 4012653 Query 116802 TGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC-GAGGCGCGGTGCTTCTACGGCTTT 116860 |||| || ||| || || ||||| || || || || | ||| || || || Sbjct 4012654 TGGTTGAAAACTTCTCTGCCGAAGTGCAA-TGTCCAGAAGCCAAATTCTTTTATGGTTTC 4012712 Query 116861 CAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT- 116919 || || ||||| || | ||||| |||| || || || || || || ||| | Sbjct 4012713 CAAATTATGATGGAAAATATTCACTCTGAAACTTACTCTTTGCTAATTGATACTTACATC 4012772 Query 116920 --GCGCTCTTCGGAGGAGAAGCTCCGTTTGT--TGAACGCCATCGAGACGATGCCGTGCG 116975 | | | | |||| || ||| | | || ||||| || || || || || Sbjct 4012773 AAGGACCC-----AAAAGAATCTGAATTTTTATTCAATGCCATTGAAACTATCCCATGTA 4012827 Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 | || | || ||||| ||||| || | |||||| || ||||| || || | Sbjct 4012828 TAAAGCAAAAAGCCGACTGGGCTTTGAGATGGATCAACGATGATGAGGCTTTATTTGGTG 4012887 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | | |||| ||||| || || || || || | ||||| || || ||| || ||| Sbjct 4012888 AAAGATTGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCTTTTGCTTCCA 4012947 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | || ||| | || || | || | ||||| || |||||||| |||||| || || | Sbjct 4012948 TCTTCTGGTTGAAAAAGAGGGGTTTGATGCCAGGGTTGACTTTCTCCAACGAACTTATTT 4013007 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGG 117209 |||| || || ||| |||| ||||||||||||||| |||| ||||||| Sbjct 4013008 CCAGAGATGAAGGTTTGCACACAGACTTTGCCTGTTTGTTGTTTTCCCATTTGG 4013061 >seq3 Length=3000806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| | ||||| || ||||| ||| | || |||||| || Sbjct 835675 AAGATGCAAATTTTCGTTAAAACCTTAACGGGTAAGACCATTACCCTTGAAGTCGAATCC 835616 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| || || | |||||||| || || || | || Sbjct 835615 TCCGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCTGAT 835556 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||| || | |||| || || ||||| |||| || | | || | |||||| Sbjct 835555 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 835496 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||| ||||| |||| |||| | || ||| | ||||| || || || Sbjct 835495 AACATCCAAAAGGAATCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGG 835443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219154918320