Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936155.1_202017- 01-05] 7 sequences; 19,567,216 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq3 104 2e-17 >seq1 Length=4889271 Score = 125 bits (138), Expect = 7e-24 Identities = 264/391 (68%), Gaps = 11/391 (3%) Strand=Plus/Minus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||| | ||| |||||||||| ||||||| | | ||| |||| |||| |||| | Sbjct 4563691 AAAAAAGCTGACTGGGCATTGAGATGGATCAATGATGACCAAGCTTTGTTTGGCGAAAGA 4563632 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 |||| || |||||| || |||||| | || || || ||| |||||| | || ||| Sbjct 4563631 TTGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCTTTTGCTTCTATCTTT 4563572 Query 52684 TACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGC 52743 | | |||| || || ||||| || | || || || || ||||| | | Sbjct 4563571 TGGTTAAAAAAGAGAGGTATGATGCCAGGTTTAACCTTCTCTAATGAATTGATTTGCAGA 4563512 Query 52744 GACGAAGGAATGCACACAGATTTTGCGTGTTTGTA-TTATAATACGCGCGTTAAAGAAAA 52802 || ||||| |||| || || || || || |||| || | | || || ||| ||| Sbjct 4563511 GATGAAGGTTTGCATACCGACTTCGCTTGCTTGTTGTTTTCACACTTGCA--AAACAAAC 4563454 Query 52803 ATTGTCATATGAAAAAATTCTAGACATGTTTAAA---GAGGCCGTCGACATTGAAAAAGA 52859 || || || ||||| | || | | ||| ||||| ||| ||||||||||| Sbjct 4563453 -----CAAATCAAGAAATTGTTGAAAAGATTATTACCGAGGCTGTCACTATTGAAAAAGA 4563399 Query 52860 GTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGA 52919 | ||||| || ||||| || || || | |||||||||||||| | |||||||| | Sbjct 4563398 ATACTTTACCGATGCTTTGCCAGTTTCTCTTTTGGGCATGAACGCTAAATTGATGTGCCA 4563339 Query 52920 GTACATCGAGTTTGTTGCGGACAGACTGTTG 52950 || | || |||||||| |||||| ||||| Sbjct 4563338 ATATGTTGAATTTGTTGCTGACAGATTGTTG 4563308 >seq3 Length=3000806 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | ||| || ||||| | || || || ||||| ||||| || || | Sbjct 835446 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 835505 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||||||||| |||||| | ||| ||||| || || Sbjct 835506 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGA 835565 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || ||| | | || | ||||||| || || || Sbjct 835566 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCGGAGGATTCGACT 835625 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || || ||||| ||||| |||||||| Sbjct 835626 TCAAGGGTAATGGTCTTACCCGTTAAGGTTTTAACGAAAATTTGCAT 835672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063956594400