Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936155.1_202017- 01-05] 7 sequences; 19,567,216 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq1 102 8e-17 seq4 91.5 1e-13 >seq3 Length=3000806 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || ||||| ||||| |||||||| || | Sbjct 835446 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 835505 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| | ||| ||||| || || Sbjct 835506 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGA 835565 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||| | | || | ||||| | || ||| ||| Sbjct 835566 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCGGAGGATTCGACT 835625 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || || ||||| ||||| |||||||| Sbjct 835626 TCAAGGGTAATGGTCTTACCCGTTAAGGTTTTAACGAAAATTTGCAT 835672 >seq1 Length=4889271 Score = 102 bits (112), Expect = 8e-17 Identities = 318/484 (66%), Gaps = 9/484 (2%) Strand=Plus/Minus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACG 50417 ||||| | || |||||||||| ||||| || | | || ||| |||||| ||| | Sbjct 4563691 AAAAAAGCTGACTGGGCATTGAGATGGATCAATGATGACCAAGCTTTGTTTGGC-GAAAG 4563633 Query 50418 TTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATT 50477 || || || ||||| ||||||||| | || || || ||| ||||| | || || Sbjct 4563632 ATTGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCTTTTGCTTCTATCTT 4563573 Query 50478 TTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCG 50537 || | |||| ||| || ||||| || | || || || || ||||||| | Sbjct 4563572 TTGGTTAAAAAAGAGAGGTATGATGCCAGGTTTAACCTTCTCTAATGAATTGATTTGCAG 4563513 Query 50538 CGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAA 50597 || ||||| |||| || ||||| || || |||| | || | | ||| ||| Sbjct 4563512 AGATGAAGGTTTGCATACCGACTTCGCTTGCTTGTTGTTTTC-ACACTTGCAAAACAAAC 4563454 Query 50598 ATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTT 50657 |||| |||| || | || | | || || ||| || |||||||| | Sbjct 4563453 CAAATCAA--GAAATTGTTGAAAAGATTATTACCGAGGCTGTCACTATTGAAAAAGAATA 4563396 Query 50658 TTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTA 50717 || || || ||||| || || | | |||||||||||||| | |||||||| | || Sbjct 4563395 CTTTACCGATGCTTTGCCAGTTTCTCTTTTGGGCATGAACGCTAAATTGATGTGCCAATA 4563336 Query 50718 CATTGAGTTTGTTGCAGACAGATTGTT-GTTGCAGCTGGGACAAC-CGAAATACTATAAT 50775 |||| |||||||| ||||||||||| ||||| | || |||| ||| || ||| Sbjct 4563335 TGTTGAATTTGTTGCTGACAGATTGTTGGTTGC--TTTGGGCAACAAGAAGGTTTACAAT 4563278 Query 50776 GCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTC 50835 | ||||| || |||||| | ||||| || |||| || ||||| ||||| || Sbjct 4563277 GTTACCAACCCATTCGACTTTATGGAAAACATTTCTTTGGCCGGTAAAACTAACTTCTTT 4563218 Query 50836 GAAA 50839 |||| Sbjct 4563217 GAAA 4563214 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| ||||| | ||||||||||||||| |||||||| || | Sbjct 2093347 CCACCTCTCAATCTCAAAACCAAATGCAATGTAGATTCTTTTTGAATGTTGTAGTCAGAC 2093406 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| | |||| | ||| || || || || Sbjct 2093407 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2093466 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 2093467 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 2093526 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || || || || || || ||||||||| Sbjct 2093527 TCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACAAAGATTTGCATA 2093574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| || || | ||||||||||||||| |||||||| || | Sbjct 2093803 CCACCTCTCAATCTCAAAACCAAGTGCAATGTAGATTCTTTTTGAATGTTGTAGTCAGAC 2093862 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| | |||| | ||| || || || || Sbjct 2093863 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2093922 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 2093923 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 2093982 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || || || || ||||| |||||||| Sbjct 2093983 TCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2094029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 262/395 (66%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 50360 AAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACGT 50418 |||| | ||| ||||| |||| ||||| || | | | ||| ||||| ||| | Sbjct 4012834 AAAAAGCCGACTGGGCTTTGAGATGGATCAACGATGATGAGGCTTTATTTGGT-GAAAGA 4012892 Query 50419 TTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTT 50478 || || || ||||| ||||||||| | || || || ||| ||||| |||| || Sbjct 4012893 TTGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCTTTTGCTTCCATCTTC 4012952 Query 50479 TACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGC 50538 | | |||| || | ||||| || | || || |||||| | ||||| | Sbjct 4012953 TGGTTGAAAAAGAGGGGTTTGATGCCAGGGTTGACTTTCTCCAACGAACTTATTTCCAGA 4013012 Query 50539 GACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAA 50598 || ||||| |||||||||||||||| ||||||| | | | | | || |||| Sbjct 4013013 GATGAAGGTTTGCACACAGACTTTGCCTGTTTGTTGTT---TTCCC----ATTTGGAAAA 4013065 Query 50599 TTATCATAC----GAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGA 50654 | | | |||| || | | || ||| ||||| || || || |||||||| Sbjct 4013066 CAAGCCACCTGCAGAAATTGTTGAGAAGATTATCACTGAAGCAGTTGATATTGAAAAAGA 4013125 Query 50655 GTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAAC-GCAGACATGATGTGCG 50713 || |||||| || || || || || |||||||||| ||||| ||| | | |||||| Sbjct 4013126 GTATTTCACTGATGCCTTGCCAGTTTCATTGTTGGGTATGAATTGCACAT-TAATGTGCC 4013184 Query 50714 AGTACATTGAGTTTGTTGCAGACAGATTGTTGTTG 50748 | || | ||||| ||||| |||||||||||| || Sbjct 4013185 AATATGTAGAGTTCGTTGCTGACAGATTGTTGGTG 4013219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| || || | ||||||||||||||| |||||||| || | Sbjct 2093575 CCACCTCTCAATCTCAAAACCAAGTGCAATGTAGATTCTTTTTGAATGTTGTAGTCAGAC 2093634 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| | |||| | ||| || || || || Sbjct 2093635 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2093694 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 2093695 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 2093754 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || || || || || || ||||||||| Sbjct 2093755 TCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACAAAGATTTGCATA 2093802 >seq4 Length=2649207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || ||||| | |||||||||||||| || ||||| || Sbjct 2557215 CCACCTCTCAATCTCAAGACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAA 2557274 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| | ||| || || || || Sbjct 2557275 AGGGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 2557334 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 2557335 ATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACT 2557394 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | || | || || || ||||| ||||| ||||| Sbjct 2557395 TCCAAGGTAATGGTTTTACCAGTCAAAGTTTTAACGAA 2557432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014355636240