Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936155.1_202017- 01-05] 7 sequences; 19,567,216 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq4 116 3e-21 seq3 114 1e-20 >seq1 Length=4889271 Score = 136 bits (150), Expect = 3e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| || || |||||| ||||||| | ||||| || || ||| Sbjct 2093573 ATGCAAATCTTTGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTCT 2093514 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| | || | ||| ||||| ||||| |||||||| ||| Sbjct 2093513 GACACTATTGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGTATTCCACCAGAC 2093457 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || || ||||| ||||||| | || || || ||| Sbjct 2093456 CAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 2093397 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || | ||||| || | || | ||||| || Sbjct 2093396 AACATTCAAAAAGAATCTACATTGCATTTGGTTTTGAGATTGAGAGGTGG 2093347 Score = 132 bits (146), Expect = 4e-26 Identities = 152/200 (76%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| || || |||||| ||||||| | ||||| || || ||| Sbjct 2093801 ATGCAAATCTTTGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTCT 2093742 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || || || ||| | || | ||| ||||| ||||| |||||||| ||| Sbjct 2093741 GACACTATTGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGTATTCCACCAGAC 2093685 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | |||||||| || || ||||| ||||||| | || || || ||| Sbjct 2093684 CAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 2093625 Query 25176 AATATTCAAAAAGAATCCAC 25195 || |||||||||||||| || Sbjct 2093624 AACATTCAAAAAGAATCTAC 2093605 Score = 129 bits (142), Expect = 5e-25 Identities = 152/201 (76%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| || || |||||| ||||||| | ||||| || || || Sbjct 2094030 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTC 2093971 Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || || || ||| | || | ||| ||||| ||||| |||||||| || Sbjct 2093970 TGACACTATTGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGTATTCCACCAGA 2093914 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| | | |||||||| || || ||||| ||||||| | || || || || Sbjct 2093913 CCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTA 2093854 Query 25175 CAATATTCAAAAAGAATCCAC 25195 ||| |||||||||||||| || Sbjct 2093853 CAACATTCAAAAAGAATCTAC 2093833 >seq4 Length=2649207 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || || |||||||| |||||| |||| || | ||||| || || || ||||| || Sbjct 2557432 TTCGTTAAAACTTTGACTGGTAAAACCATTACCTTGGAAGTCGAATCTTCCGACACCATT 2557373 Query 25068 GAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || || | || | ||| ||||||||||| ||||||||||||||||| | Sbjct 2557372 GA--CAATGTCAAATCCAAGATTCAA-GACAAAGAAGGTATTCCACCTGACCAACAAAGA 2557316 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || |||||||| ||||||| | || | || |||||||| ||| Sbjct 2557315 TTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACCCTTTCTGACTACAATATCCAA 2557256 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || | ||||| || | || | ||||| || Sbjct 2557255 AAAGAATCTACTTTGCATTTGGTCTTGAGATTGAGAGGTGG 2557215 >seq3 Length=3000806 Score = 114 bits (126), Expect = 1e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || ||||| |||| || | ||||| || || || Sbjct 835672 ATGCAAATTTTCGTTAAAACCTTAACGGGTAAGACCATTACCCTTGAAGTCGAATCCTCC 835613 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || || || ||| ||||||||||| ||||||||||| | Sbjct 835612 GACACTATTGA--CAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCTGATC 835555 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | || ||||| || |||||||| ||||||| | | ||| || || |||| Sbjct 835554 AACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACA 835495 Query 25177 ATATTCAAAAAGAATCCAC 25195 | || ||||| |||||||| Sbjct 835494 ACATCCAAAAGGAATCCAC 835476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327963031705