Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936155.1_202017- 01-05] 7 sequences; 19,567,216 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 141 3e-28 seq1 140 1e-27 seq5 93.3 1e-13 >seq2 Length=4132043 Score = 141 bits (156), Expect = 3e-28 Identities = 594/924 (64%), Gaps = 19/924 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| |||| ||||| || ||||| || || || || ||||| ||||| |||| Sbjct 215779 CAACAGAAGCCAAGTTACAAACAGCAGTTTCATTTTCATCTGAATATTCGACAATTTCAC 215720 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | |||| ||| ||| ||||| || | |||||| ||||| |||||| ||||||| Sbjct 215719 AACACAAGTTGGAAGATTTGATAAGACCAAGATTCTTTTGGTTGGATTTAGCATTACAAG 215660 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT-CTTTAGC 155765 |||| || || | ||| |||| || || || || | || || |||| ||| || || | Sbjct 215659 CATCTTTATACAACATGAATGGAGTACCAGTTTCAGTTTGAGCTTCCAAAATGCTGTA-C 215601 Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTA--TCTGCCTTCCGACTCATATTTCATAT 155823 || | | |||| |||| | || || || ||||||||| ||||||||| || Sbjct 215600 CACAACTTTTGGGCCTTAA--CGGTTCTTCTACCTCTGCCTTCTCTTTCATATTTCTCAT 215543 Query 155824 ACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA-CTT-ATCGGGGCA 155881 | || | | | | || ||||| ||| ||| || || || ||| || ||| | Sbjct 215542 AAAGGGCTTCGAATTCTTCACCATAAGTGTCAGCCAAACC--TTCAGCTTCATTAGGGGA 215485 Query 155882 AAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAA 155939 ||||| | ||| || || | || || | || |||||||| || ||| Sbjct 215484 AAACAAGGTCCAGTCTTGGTT--CTTTTCAACTCTCTTCATAAATAAGTCGGAGATCCAT 215427 Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 | ||| ||| | || || ||| | || || | || |||||||| | | || Sbjct 215426 AAAGCTGGGAATAAATCTCTGGCCCTGATTTCTTCTTTACCATGATTCTTTCTGATATCA 215367 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 | ||| || ||||| | || ||| || | ||| || ||||| |||| || Sbjct 215366 ATGAAATCAAAGATATCTGAGTGCCATGGTTCAACATATATGGCAAAGGCACCAGGTCTT 215307 Query 156060 TTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 ||| ||||| ||||| ||||| | || || || ||||| || | | ||| |||||| Sbjct 215306 TTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTTGAAAACTCTCAACATTGGAATA 215247 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 ||||| || || || ||||| || || ||||| ||||||| || | || ||| | Sbjct 215246 ATACCGTTAGAGGTACCATTAGTACCAGCAATATAAGAACCAGTAGATCTAATATTGTTG 215187 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT-ACAGTATT 156235 || || | |||||||| || | |||| || || |||| ||| | ||| | Sbjct 215186 ATGTGCAAACCAATACCGCCAGCGTGTTTACTGATAATGGC-CATTTGTTTCAAAGTTTC 215128 Query 156236 GAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGG 156295 |||||||| ||||| || |||| | ||| | | || | || ||| | ||| | Sbjct 215127 AAAAATACCATCAATGGAGTCATTCTTCATGGCCACAAGGAAACAAGAAGACATTTGGGC 215068 Query 156296 TCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || || |||||||| || | ||| || | |||||| | ||||| || |||||| Sbjct 215067 ATTAGGAGTACCAGCGTTAAACAATGTTGGAGAAGCATGAGTGAAATATTTGAGAGACAT 215008 Query 156356 ATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCT 156415 ||| ||| || ||| | || || || ||||| |||| |||| || || Sbjct 215007 CAAATTGTAAGTTTCCAACACTTTTGGAATATCTTCACCGTGGATACCAATAGCAACTCT 214948 Query 156416 CATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCG 156475 ||| || || || || | || ||| |||| ||||| || | ||| | | Sbjct 214947 CATGACCAAGTGTTGTGGTCTTTCAGCAACTTTACCATTAATTCTCAACAAGTAGGATCT 214888 Query 156476 TTCCAGAGTTTTAAACCCGAAATA 156499 ||||| |||||| || || || || Sbjct 214887 TTCCAAAGTTTTGAAACCAAAGTA 214864 Score = 84.2 bits (92), Expect = 6e-11 Identities = 89/117 (76%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| |||||| || ||||| || || || | |||| |||||||||||||| Sbjct 2251566 AATTTCTTTAATACGAGGCACACCCAATGTAACATT---CATGGAAGCAACACCAGCAAA 2251622 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 |||||||| |||| ||| | ||| ||| ||| ||||||||| || ||| |||| Sbjct 2251623 ATGGAAAGTTTTCAAAGTCATTTGCGTACCTGGTTCACCAATAGAATGGGCCCCAAT 2251679 >seq1 Length=4889271 Score = 140 bits (154), Expect = 1e-27 Identities = 319/465 (69%), Gaps = 15/465 (3%) Strand=Plus/Plus Query 133205 GAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTT 133264 |||| | |||| | |||| | || || || |||||||| |||||||||||||| | Sbjct 4012587 GAAAGATATTTCCTCTCTAGAGTGTTGGCTTTCTTTGCTGCTAGTGATGGTATTGTCAAT 4012646 Query 133265 GAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGCC-GAAGCCCGTGCCTTT 133321 ||||| || | ||| || | | || ||||| ||| || || |||||| |||| Sbjct 4012647 GAAAACTTGGTTGAAAACT-TCTCTGCC-GAAGTGCAA-TGTCCAGAAGCCAAATTCTTT 4012703 Query 133322 TATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGAT 133381 ||||| | || ||| |||||||||||| || ||| || || ||| ||||||||| Sbjct 4012704 TATGGTTTCCAAATTATGATGGAAAATATTCACTCTGAAACTTACTCTTTGCTAATTGAT 4012763 Query 133382 ACTTACATCAAAGATACCGTCCAGAAGCACAA--ACTATTCAACGCCATTAGCGAAT-TT 133438 ||||||||||| | ||| |||| | || ||||||| |||||| | | | | Sbjct 4012764 ACTTACATCAAGG--ACCCAAAAGAATCTGAATTTTTATTCAATGCCATT-GAAACTATC 4012820 Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 || ||||| || | ||| | ||||||||| | | ||||||| | || | || Sbjct 4012821 CCATGTATAAAGCAAAAAGCCGACTGGGCTTTGAGATGGATCAACGATGATGAGGCTTTA 4012880 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 |||| | | | ||||| ||||||| || || || ||||| ||| |||| | || Sbjct 4012881 TTTGGTGAAAGATTGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTC-TTT 4012939 Query 133559 TGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617 ||| || || || ||| | |||||| | ||| | | || || || ||| || ||||| Sbjct 4012940 TGCTTCCATCTTCTGGTTGAAAAAGAGGGGTTTGATGCCAGGGTTGACTTTCTCCAACGA 4012999 Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC-GTTT 133661 ||||||||| || || || | | ||||| || |||||| |||| Sbjct 4013000 ACTTATTTCCAGAGATGAAGGTTTGCACACAGACTTTGCCTGTTT 4013044 Score = 89.7 bits (98), Expect = 2e-12 Identities = 215/321 (67%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| ||||| ||||| |||| || | | |||| ||||||||| || | Sbjct 4182042 TTTACCAATTGCATCGATTTCATCAACAAATACAATTGCTGGAGCATTTTGTCTAGCGGT 4182101 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 | || || || | || | || || |||| ||| ||| |||| || ||||||||||| Sbjct 4182102 TTTGAACAAGTCACGAACTCTAGAAGCACCAACACCCACAAACATCTCCACAAATTCAGA 4182161 Query 289146 AGCGGATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | | || || |||| || || ||| ||||| || || ||| | || | | | Sbjct 4182162 ACCAGAAACA-GAATAAAATGGTACTCCAGCTTCACCAGCAGTAGCCTTAGCTAATAAGG 4182220 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAG 289264 | ||||| || || || || || ||| | | || |||| | || || || || Sbjct 4182221 TTTTACCGGTACCTGGAGGACCAGATAAGATTGCACCTCTTGGAATCTTAGCACC--CAA 4182278 Query 289265 ACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 || |||||| |||| | || ||||||| |||| |||| || ||| | ||| || Sbjct 4182279 TTTTTCATATTTGCCAGGATTTTTCAAAAATTTAACAAATTCCATAATTTCTTCTTTGGC 4182338 Query 289323 CTCATCACATCCTGCTACATC 289343 ||||||||| || |||||||| Sbjct 4182339 CTCATCACAACCAGCTACATC 4182359 >seq5 Length=2100688 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/186 (72%), Gaps = 5/186 (3%) Strand=Plus/Minus Query 301768 AAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTC-TTCAAT 301826 || || ||||| |||||||| |||| |||| | | | || ||||| || ||| Sbjct 895857 AAGTAGATAGTCAAGGATGGAGTCTTAATGTTCTTTGCCACGTTAAGGATTTCCTTTAAT 895798 Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 | || |||||| | || ||||| |||||| | |||||||||| | ||||||||||| Sbjct 895797 -CTAGGTACACCAAGAGTAACGTT---CTTGGAAGAAACACCAGCATAATGGAAAGTATT 895742 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 || || | || |||| |||||||||||| ||| || |||| | ||| |||||||| Sbjct 895741 CAACGTCATCTGCGTAGCAGGCTCACCAATAGATTGAGCAGCAAGAACACCCACCATTTC 895682 Query 301947 TCCTGG 301952 || || Sbjct 895681 ACCAGG 895676 Score = 93.3 bits (102), Expect = 1e-13 Identities = 219/326 (67%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAG--AATTTTGTCTC 289080 || |||||||| |||||||||||| |||| ||||| | |||| | |||| || | Sbjct 1428938 TTCTTTACCAATAGCATCAATTTCATCAACAAAAATAATTGCAGGAGCCATTTTTCTCGC 1428879 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || ||| ||||| || | || | || || |||| ||| ||| ||||||| ||||| Sbjct 1428878 GCTCTTG--AATAAGTCACGAACTCTTGAAGCACCAACACCGACAAACATTTCCACAAAC 1428821 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||||| | || ||| | |||| ||| ||||| || || ||| |||| | Sbjct 1428820 TCAGAACCAGAAACTGACAAAAATGGAACACCAGCTTCACCAGCAGTAGCCTTCGCTAAC 1428761 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | ||| ||||| || || || || || || | | ||| |||| | || || || Sbjct 1428760 AATGTTTTACCAGTACCTGGAGGACCAGACAAAATTGCACCCCTTGGGATCTTAGCTCC- 1428702 Query 289261 GCAGACTT---ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 || |||| ||| || |||| | || |||||| ||||| |||| | ||| | | Sbjct 1428701 -CA-ACTTTTCATACTTGGCAGGATTTTTCAAAAATGATACAAATTCCATGATTTCTTCT 1428644 Query 289318 TTTGCCTCATCACATCCTGCTACATC 289343 || || || ||||| || || ||||| Sbjct 1428643 TTAGCTTCTTCACAACCAGCAACATC 1428618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817467996359