Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936155.1_202017- 01-05] 7 sequences; 19,567,216 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq4 96.9 2e-15 seq1 89.7 4e-13 >seq3 Length=3000806 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || ||||| | || || || ||||| |||| |||||| | Sbjct 835675 AAGATGCAAATTTTCGTTAAAACCTTAACGGGTAAGACCATTACCCTTGAAGTCGAATCC 835616 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| | | ||||| |||||| || || |||||||||||| |||| | Sbjct 835615 TCCGACACTATTGACAAT--GTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCTG 835558 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | || || ||||| || ||||||||||| || | | | ||||| || | Sbjct 835557 ATCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACT 835498 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| || ||| ||||| ||||| ||| | ||| | || || Sbjct 835497 ACAACATCCAAAAGGAATCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGG 835446 >seq4 Length=2649207 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 27798 TTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCGACG--AT 27855 ||| || |||||| | ||||| ||| ||||| | || |||||| ||||| || Sbjct 2557433 TTTCGTTAAAACTTTGACTGGTAAAACCATTACCTTGGAAGTCGAATCTTCCGACACCAT 2557374 Query 27856 GTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGG 27915 ||||| |||||| || || |||||||||||| |||| || || ||| | Sbjct 2557373 TGACAAT--GTCAAATCCAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGA 2557316 Query 27916 TTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAA 27975 || || ||||| || ||||||||||| || | | | | | || || ||||| |||||| Sbjct 2557315 TTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACCCTTTCTGACTACAATATCCAA 2557256 Query 27976 AAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||||||||||| ||| | ||| | || || Sbjct 2557255 AAAGAATCTACTTTGCATTTGGTCTTGAGATTGAGAGGTGG 2557215 >seq1 Length=4889271 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || || ||| | || |||||||| || || |||||||| Sbjct 2093480 GACAAGGAAGGTATTCCACCAGACCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAA 2093421 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | | | |||||| || |||||||| |||||||| || ||||||||||||||| Sbjct 2093420 GATGGCAGAACCTTGTCTGACTACAACATTCAAAAAGAATCTACATTGCATTTGGTTTTG 2093361 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 2093360 AGATTGAGAGGTGG 2093347 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || || | ||||| ||| || || | || || ||| | Sbjct 2094030 AATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTC 2093971 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| ||||| || || ||||| |||||| |||| || Sbjct 2093970 TGACACTATTGACAAT--GTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGAC 2093913 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||| | || |||||||| || || |||||||| || | | | |||||| || ||| Sbjct 2093912 CAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 2093853 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| |||||||| || ||||| ||||||||| | ||| | || || Sbjct 2093852 AACATTCAAAAAGAATCTACATTGCACTTGGTTTTGAGATTGAGAGGTGG 2093803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862369640489