Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 seq2 118 9e-22 seq3 84.2 2e-11 >seq1 Length=4909981 Score = 154 bits (170), Expect = 1e-32 Identities = 506/774 (65%), Gaps = 27/774 (3%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 ||||| | ||||| || | || | || || ||| | ||||||||||| |||||||| Sbjct 3918330 TTTGTATTATTTCCCATAAAGTACCATGAAATATGGCAAATGTACAAAAAAGCAGAAGCT 3918271 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTC 57659 || || ||||||| ||| ||| | || || ||||||| || |||||| | || Sbjct 3918270 TCTTTCTGGACCGCCGAGGAAATTGATCTTGGTAAGGATTTGCATGATTGGAA----CTA 3918215 Query 57660 AAAG---AATCTGAGAGAAATTTTATTAAACAC----GTGTTGGCGTTTTTCGCCGCATC 57712 ||| ||| | ||| || || | | ||| | || ||||| |||||||| Sbjct 3918214 TAAGTTGAATAGCAATGAACAGTTTTTCATTTCCAGAGTGCTAGCATTTTTTGCCGCATC 3918155 Query 57713 CGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACG 57770 ||||| || ||||| |||||| | || | ||| |||| | | |||| || | | Sbjct 3918154 GGATGGCATCGTTAATGAGAATCTTGT--ACAGAATTTCTCTACCCAAGTACAGATTCCC 3918097 Query 57771 GAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 || || | ||||||||| || |||||| | || || || || |||||||| | || Sbjct 3918096 GAAGCCAAATGCTTTTATGGTTTTCAAATAATGATGGAGAATGTTCATTCAGAGACATAC 3918037 Query 57831 TCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTG-TTCAACGC 57889 || || | || ||||| || | ||| || || || | | || || || Sbjct 3918036 TCTCTGTTGATAGATACTTATATTCTGGATCCTGAACAGGC-CGAATTTTTATTTAATGC 3917978 Query 57890 GATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 || || ||||| || || | || ||||| ||| | | | |||||| || Sbjct 3917977 AATTGATACAATTCCATGCATTAAAGAAAAAGCAGACTGGGCGCTTAGATGGATTGAAGA 3917918 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 | || || || || || || | || || || ||||| ||||||||||| || Sbjct 3917917 TGAAGACGCTTTATTTGCTGAAAGATTAGTAGCATTTGCTGCCGTTGAAGGTATATTTTT 3917858 Query 58010 TTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGAC 58069 ||| || || || | ||||||||| | |||||| | || || |||||||| || || Sbjct 3917857 TTCCGGTTCTTTCGCTTCGATATTTTGGCTCAAGAAAAGAGGTCTTATGCCCGGTCTTAC 3917798 Query 58070 GTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAAT 58129 || ||| |||||||| | ||||| || ||||| |||||||||||||| || || | Sbjct 3917797 TTTCTCCAATGAGTTGATTTGTCGCGATGAAGGTCTTCATACTGATTTTGCCTGTTTATT 3917738 Query 58130 GTACTCTCACATTGTCAATAAACC-GACGCGGGATCGCAT-CTTG--GACATTATCACCG 58185 ||| || || | | || ||||| || || | | || ||| | || || || | Sbjct 3917737 GTATTCGCATTTGGAAAACAAACCTGATGCAGAA----ATAGTTGATAAAATAATAACAG 3917682 Query 58186 AGGCGGTCGCGATCGAAAATGAGTT-TGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 ||||||| | || ||||| | ||| | | |||||| || | || | |||| || Sbjct 3917681 AGGCGGTTGAAATTGAAAA-GCGTTATTTTGACGAAGCATTATCTGTTTCTTTGCTTGGA 3917623 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 |||||| | |||||| ||||| |||||||||| || || ||| | ||| Sbjct 3917622 ATGAACGCTTCATTGATGAATCAGTACGTTGAGTTTGTGGCTGATAGATTATTG 3917569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || ||||| ||||| | || |||||| | || Sbjct 2136124 ATGCAAATTTTCGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTCT 2136065 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || ||||||||||| | || || ||||| Sbjct 2136064 GACACTATTGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 2136005 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || ||||||||||| | || || || || ||| Sbjct 2136004 CAAAGATTGATTTTTGCTGGTAAGCAGTTGGAAGATGGCAGAACCTTGTCTGACTACAAC 2135945 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || | || |||| | ||| |||| || |||| Sbjct 2135944 ATCCAAAAAGAATCCACATTGCACTTGGTTTTGAGATTGAGAGGTGGTA 2135896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| | || || ||||| ||||| | || |||||| | || Sbjct 2135896 ATGCAAATCTTTGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTCT 2135837 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || ||||||||||| | || || ||||| Sbjct 2135836 GACACTATTGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 2135777 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| || || |||||||| | || || || || ||| Sbjct 2135776 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAAC 2135717 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||||| || | ||| |||| | ||| |||| || ||| Sbjct 2135716 ATTCAAAAAGAATCCACATTGCATTTGGTTTTGAGATTGAGAGGTGGT 2135669 >seq2 Length=4155432 Score = 118 bits (130), Expect = 9e-22 Identities = 418/646 (65%), Gaps = 9/646 (1%) Strand=Plus/Minus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 |||||||| | ||||||| | || | ||||||| ||| ||| | || | ||| Sbjct 220381 TTTTCAACTCTCTTCATAAATAAGTCGGAGATCCATAAAGCTGGGAATAAATCTCTGGCC 220322 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | | || ||||| || |||||| | | ||| | || || || | || | ||| Sbjct 220321 CTGATTTCTTCTTTACCATGATTCTTTCTGATATCAATGAAATCAAAGATATCTGAGTGC 220262 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || || || | || | |||||| || || ||||| || || || || ||||| || || Sbjct 220261 CATGGTTCAACATATATGGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCAACATAT 220202 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 | ||| ||||||||| | ||||| | ||| || | | ||| || || | || Sbjct 220201 CTGGCGGTGTTGTTGAAAACTCTCAACATTGGAATAATACCATTAGAGGTACCATTAGTA 220142 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCC-GCC 23637 || || | | ||||| | | || || |||| | ||| ||||| || || || || Sbjct 220141 CCAGCAATATAAGAACCAGTAGATCTAATATTGTTGATGTGCAAACCAATACCGCCAGCG 220082 Query 23638 CGATTTC-GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 | || | |||| || || |||||||| ||| || | || || || ||| ||| | Sbjct 220081 TGTTTACTGATA--ATGGCCATTTGTTTCAAAGTTTCAAAAATACCATCAATGGAGTCAT 220024 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 || | || || | |||||| ||||||||||| || || || ||| | || |||| Sbjct 220023 TCTTCATGGCCACAAGGAAACAAGAAGACATTTGGGCATTAGGAGTACCAGCGTTAAACA 219964 Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816 ||| || || || || || ||| ||||| | |||||| || || | | Sbjct 219963 ATGTTGGAGAAGCATGAGTGAAATATTTGAGAGACATCAAATTGTAAGTTTCCAACACTT 219904 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 ||| || || ||||| ||||| || || || | ||| | || || ||| ||||| | Sbjct 219903 TTGGAATATCTTCACCGTGGATACCAATAGCAACTCTCATGACCAAGTGTTGTGGTCTTT 219844 Query 23877 C--GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 | | | | | || |||||| | |||| || || | || || ||||| || ||||| Sbjct 219843 CAGCAACTTTA--CCATTAATTCTCAACAAGTAGGATCTTTCCAAAGTTTTGAAACCAAA 219786 Query 23935 ATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAA 23980 |||| || || || || | || | ||||| || ||| ||||| Sbjct 219785 GTAGTTGTAATTGAAATCTCTGTCATATACTATAGCAGAA-TCAAA 219741 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 22414 CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCC 22473 ||| ||||| ||| | ||||||||| | || | |||| || | |||||| ||||| Sbjct 221312 CCATAAACCCATGTCAACCAAATCTTTTAACAAGTATGGGTTAACGATTTGAAATTCGCC 221253 Query 22474 GGACAAGA-CGCGGCGTTGG--TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTT 22530 | ||||| | | | ||| |||||||| || ||| | ||||| ||| ||||||||| Sbjct 221252 AG-CAAGAACTCTTC--TGGAATAAATGTTAGAAGTGTATGGTTCAAAACATTCATTGTA 221196 Query 22531 TCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAA 22590 |||| || || | || ||||| || ||||| || || | || | ||||||||||| Sbjct 221195 ACCCAAAATTTGGGAAGTAGAAGCAGTTGGCATTGGAGCAACCAACAAAGAGTTTCTCAA 221136 Query 22591 GCCGTGCTT 22599 || ||||| Sbjct 221135 ACCATGCTT 221127 >seq3 Length=2682731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || || | || || || || || ||| | || || ||| | Sbjct 829810 AAGATGCAAATTTTCGTTAAAACCTTAACGGGTAAGACCATTACCCTTGAAGTCGAATCC 829751 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | | || | |||||| | || ||||| ||||| | || || || Sbjct 829750 TCCGACACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCTGAT 829691 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| ||||| |||||||| || ||| || || || Sbjct 829690 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 829631 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| || | || |||| | ||| |||| || ||| Sbjct 829630 AACATCCAAAAGGAATCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGT 829580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766360995440