Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq1 102 8e-17 seq4 91.5 1e-13 >seq3 Length=2682731 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || ||||| ||||| |||||||| || | Sbjct 829581 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 829640 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| | ||| ||||| || || Sbjct 829641 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGA 829700 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || ||| | | || | ||||| | || ||| ||| Sbjct 829701 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCGGAGGATTCGACT 829760 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || || ||||| ||||| |||||||| Sbjct 829761 TCAAGGGTAATGGTCTTACCCGTTAAGGTTTTAACGAAAATTTGCAT 829807 >seq1 Length=4909981 Score = 102 bits (112), Expect = 8e-17 Identities = 318/484 (66%), Gaps = 9/484 (2%) Strand=Plus/Minus Query 50359 AAAAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACG 50417 ||||| | || |||||||||| ||||| || | | || ||| |||||| ||| | Sbjct 4604940 AAAAAAGCTGACTGGGCATTGAGATGGATCAATGATGACCAAGCTTTGTTTGGC-GAAAG 4604882 Query 50418 TTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATT 50477 || || || ||||| ||||||||| | || || || ||| ||||| | || || Sbjct 4604881 ATTGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCTTTTGCTTCTATCTT 4604822 Query 50478 TTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCG 50537 || | |||| ||| || ||||| || | || || || || ||||||| | Sbjct 4604821 TTGGTTAAAAAAGAGAGGTATGATGCCAGGTTTAACCTTCTCTAATGAATTGATTTGCAG 4604762 Query 50538 CGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAA 50597 || ||||| |||| || ||||| || || |||| | || | | ||| ||| Sbjct 4604761 AGATGAAGGTTTGCATACCGACTTCGCTTGCTTGTTGTTTTC-ACACTTGCAAAACAAAC 4604703 Query 50598 ATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTT 50657 |||| |||| || | || | | || || ||| || |||||||| | Sbjct 4604702 CAAATCAA--GAAATTGTTGAAAAGATTATTACCGAGGCTGTCACTATTGAAAAAGAATA 4604645 Query 50658 TTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTA 50717 || || || ||||| || || | | |||||||||||||| | |||||||| | || Sbjct 4604644 CTTTACCGATGCTTTGCCAGTTTCTCTTTTGGGCATGAACGCTAAATTGATGTGCCAATA 4604585 Query 50718 CATTGAGTTTGTTGCAGACAGATTGTT-GTTGCAGCTGGGACAAC-CGAAATACTATAAT 50775 |||| |||||||| ||||||||||| ||||| | || |||| ||| || ||| Sbjct 4604584 TGTTGAATTTGTTGCTGACAGATTGTTGGTTGC--TTTGGGCAACAAGAAGGTTTACAAT 4604527 Query 50776 GCACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTC 50835 | ||||| || |||||| | ||||| || |||| || ||||| ||||| || Sbjct 4604526 GTTACCAACCCATTCGACTTTATGGAAAACATTTCTTTGGCCGGTAAAACTAACTTCTTT 4604467 Query 50836 GAAA 50839 |||| Sbjct 4604466 GAAA 4604463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 262/394 (66%), Gaps = 15/394 (4%) Strand=Plus/Plus Query 50361 AAAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTTTGGCCGAACGTT 50419 ||| | ||| ||||| |||| ||||| || | | | ||| ||||| ||| | | Sbjct 4056251 AAAAGCCGACTGGGCTTTGAGATGGATCAACGATGATGAGGCTTTATTTGGT-GAAAGAT 4056309 Query 50420 TAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTT 50479 | || || ||||| ||||||||| | || || || ||| ||||| |||| || | Sbjct 4056310 TGGTTGCCTTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGTTCTTTTGCTTCCATCTTCT 4056369 Query 50480 ACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCG 50539 | |||| || | ||||| || | || || |||||| | ||||| | | Sbjct 4056370 GGTTGAAAAAGAGGGGTTTGATGCCAGGGTTGACTTTCTCCAACGAACTTATTTCCAGAG 4056429 Query 50540 ACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAAT 50599 | ||||| |||||||||||||||| ||||||| | | | | | || |||| Sbjct 4056430 ATGAAGGTTTGCACACAGACTTTGCCTGTTTGTTGTT---TTCCC----ATTTGGAAAAC 4056482 Query 50600 TATCATAC-GAAACAATTTTGGACATGTT---CAAAGAAGCCGTCGACATCGAAAAAGAG 50655 | | | | | |||| | || | | | || ||||| || || || ||||||||| Sbjct 4056483 AAGCCACCTGCAGAAATTGTTGAAAAGATTATCACTGAAGCAGTTGATATTGAAAAAGAG 4056542 Query 50656 TTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAAC-GCAGACATGATGTGCGA 50714 | |||||| || || || || || |||||||||| ||||| ||| | | |||||| | Sbjct 4056543 TATTTCACTGATGCCTTGCCAGTTTCATTGTTGGGTATGAATTGCACAT-TAATGTGCCA 4056601 Query 50715 GTACATTGAGTTTGTTGCAGACAGATTGTTGTTG 50748 || | ||||| ||||| |||||||||||| || Sbjct 4056602 ATATGTAGAGTTCGTTGCTGACAGATTGTTGGTG 4056635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| ||||| | ||| ||||||||||| |||||||| || | Sbjct 2135670 CCACCTCTCAATCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2135729 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| | |||| | ||| || || || || Sbjct 2135730 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2135789 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 2135790 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 2135849 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || || || || || || || ||||||||| Sbjct 2135850 TCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACAAAGATTTGCATA 2135897 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| || || | ||| ||||||||||| |||||||| || | Sbjct 2135898 CCACCTCTCAATCTCAAAACCAAGTGCAATGTGGATTCTTTTTGGATGTTGTAGTCAGAC 2135957 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || ||||||||| | |||| | ||| || || || || Sbjct 2135958 AAGGTTCTGCCATCTTCCAACTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2136017 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 2136018 ATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 2136077 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || || || || || ||||| |||||||| Sbjct 2136078 TCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2136124 >seq4 Length=2685930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || ||||| | |||||||||||||| || ||||| || Sbjct 2594949 CCACCTCTCAATCTCAAGACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAA 2595008 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||||| | ||| || || || || Sbjct 2595009 AGGGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 2595068 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 2595069 ATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGACT 2595128 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | || | || || || ||||| ||||| ||||| Sbjct 2595129 TCCAAGGTAATGGTTTTACCAGTCAAAGTTTTAACGAA 2595166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014355636240