Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 104 1e-17 seq4 100 2e-16 seq1 100 2e-16 >seq3 Length=2682731 Score = 104 bits (114), Expect = 1e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||| ||||| || || || ||||| || ||||| |||| Sbjct 829579 CACCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAG 829638 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||| | || |||||||| || ||| ||| || || | ||| || || | | Sbjct 829639 ACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTG 829698 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | || |||||||| || ||| ||| || | | ||| |||||| || || | Sbjct 829699 GAATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCGGAGGATTCGA 829758 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || || || || || ||||| | ||||| |||||||||||||| || Sbjct 829759 CTTCAAGGGTAATGGTCTTACCCGTTAAGGTTTTAACGAAAATTTGCATCTT 829810 >seq4 Length=2685930 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| ||||| || | ||| ||||||||||| || || |||||||| |||||||| |||| Sbjct 2594947 CACCACCTCTCAATCTCAAGACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAG 2595006 Query 33201 ACAAATTGAGTTG--GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 ||| | || || |||||||| || ||| ||| || || | ||| ||||| | Sbjct 2595007 --AAAGGGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGG 2595064 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || |||||||| || |||| ||| || | | ||| |||||| | || Sbjct 2595065 TGGAATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTC 2595124 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAA 33361 || |||| || || ||||| || || | |||||| |||||| Sbjct 2595125 GACTTCCAAGGTAATGGTTTTACCAGTCAAAGTTTTAACGAAA 2595167 >seq1 Length=4909981 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| |||||||||||||| || |||||||| || ||||| ||||| Sbjct 2135669 ACCACCTCTCAATCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATGTTGTAGTCAGA 2135728 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || ||||||||||| ||| ||| || || | ||| ||||| | || Sbjct 2135729 CAAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGG 2135788 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| || || | | ||| ||||| | || ||| Sbjct 2135789 AATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 2135848 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || ||||| || || | || || || || |||||||| Sbjct 2135849 TTCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACAAAGATTTGCAT 2135896 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| ||||| |||||||| || |||||||| || ||||| ||||| Sbjct 2135897 ACCACCTCTCAATCTCAAAACCAAGTGCAATGTGGATTCTTTTTGGATGTTGTAGTCAGA 2135956 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || ||||| ||||| ||| ||| || || | ||| ||||| | || Sbjct 2135957 CAAGGTTCTGCCATCTTCCAACTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGG 2136016 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAAC 33321 || ||||| || || |||| || || | | ||| ||||| | || ||| Sbjct 2136017 AATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 2136076 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || ||||| || || | || || |||||||||||||| Sbjct 2136077 TTCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCAT 2136124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777572804286