Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq6 129 7e-25 seq3 86.0 7e-12 >seq1 Length=4909981 Score = 141 bits (156), Expect = 1e-28 Identities = 365/548 (67%), Gaps = 35/548 (6%) Strand=Plus/Plus Query 6711 ATAATCTAACAAT-TCAAAATCTTCAAATTTAAAATCACATAAATTATCAGACttttttt 6769 |||||| |||||| |||||||| ||||| ||||| ||| | ||| ||| |||||| | Sbjct 1824499 ATAATC-AACAATCTCAAAATCATCAAACTTAAAGTCATCAATATTTTCA-ACTTTTCTG 1824556 Query 6770 ttAATATTACAACAG-GTGAAGGTTTTATTGA-TCGAGTTAATTGTTCTTTTATAGCTTT 6827 || || || |||| | ||| || || || | | || || | | |||| Sbjct 1824557 TTGATCTT-CAACTTTGGGAAACTTCTAGGCTCTCTCTTGAGCTGCTCCTGCAATGCTTC 1824615 Query 6828 TATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCAT 6887 ||||||||| |||| ||||||||| || | || ||||| || ||||| | ||| Sbjct 1824616 GATATGATCTTTGTAAACATGAGCATCGCCCATAGTGTGAATGAACTCACCGCAGTCCAT 1824675 Query 6888 ATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTAC 6947 ||| | ||| |||||| | | || || |||||||||||||| | ||| || || || Sbjct 1824676 GTCACAAACTTCAGCAATCATTTTGGTCAACAATGCATAAGAAGCAATATTGAATGGCAC 1824735 Query 6948 ACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG---ATAAAATATTGTCT-- 7002 || | ||||||||| |||||||||| ||| ||||| | || | | |||| Sbjct 1824736 CCCAAGTCCCATATCACAGGATCTTTGAT-ACA---ACAAGCAACTCAACTTTGGTCTGC 1824791 Query 7003 --------------ATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCT 7048 | | ||||| |||| || || || ||||| ||||| ||| Sbjct 1824792 CTTCTTTGGGGAAATTCACGTAAAACTGACTAAACACGTGGCATGGCGGTAA---TGCCA 1824848 Query 7049 GATCT---ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTG 7105 | | | ||| | || |||||||||| ||| | || | |||||||| |||||| | Sbjct 1824849 TTTTTGGAAAATCTGGAGGGTTCCAAGCAGACATAATGATTCTTCTATCATATGGATTGG 1824908 Query 7106 TTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTAT 7165 |||| ||||| |||| | || |||||| | ||||| || || | ||||| Sbjct 1824909 TTTTCAATTTATGGATAACTTGGGCTAGTTGATCAACTCCCTGGCCCGAGTAGTCAGTAT 1824968 Query 7166 GACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAAT 7225 ||||| | |||| | ||| |||||||| |||||||| || ||||| | || || | || Sbjct 1824969 CACAATCTTTATATTCAGCACCAAAATGCCTCCATTGGAATCCATACACCGGTCCAAGAT 1825028 Query 7226 CACCTTCT 7233 | |||||| Sbjct 1825029 CGCCTTCT 1825036 >seq6 Length=1400908 Score = 129 bits (142), Expect = 7e-25 Identities = 387/590 (66%), Gaps = 27/590 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| ||||| | ||||| |||| || || || | ||||||||| || Sbjct 952058 AAGTTTGAAGATATGGGTATTGGTGGGTTAGACACGGAGTTCTCGCAGATTTTCAGAAGA 951999 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAACATAT 164516 || ||||| ||| | | |||| | | | |||| | ||||| || || ||| | Sbjct 951998 GCTTTTGCATCTCG-TATTTTCCCACCTGGCTTAATTGACAAATTGGGGATCAATCATGT 951940 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||||| | || | ||| || || ||| |||||||| ||||| ||| || || Sbjct 951939 TAAAGGGTTGTTGCTTTTTGGCCCCCCAGGTACTGGTAAAACTTTAATTGCTAGAAAAAT 951880 Query 164577 TGCTCAAGCTTTTAAATCGC------GACCCGTTAAAATTGTTAATGGTCCTGAATTATT 164630 || | || | || ||| || || || || |||||||| ||||| ||| | | Sbjct 951879 TGGTAAAT-TATTGAATGGCTCTGCTGAACCC--AAGATTGTTAACGGTCCAGAAATCCT 951823 Query 164631 GAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGA 164690 |||||| || ||| || |||| ||| ||||||| ||||| | || || |||| Sbjct 951822 CTCCAAATACGTTGGTAGTTCTGAAGAGAATATTAGAAATTTGTTCAAAGATGCAGAAGC 951763 Query 164691 AGAACAAAAGA--AAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATA 164748 ||| | ||| ||| ||| | || | || ||| ||||| | ||||| || | Sbjct 951762 CGAATACAAGGCCAAGAAGGAAAA-CTCATCC-TTGCATATTATTATCTTTGACGAATTG 951705 Query 164749 GATGCTCTTTGCAAAAAACGTGG---------TGATAATAT---TATTCATGATGCAGTG 164796 ||| || ||| ||| || | || |||| || | || |||| ||| Sbjct 951704 GATTCTGTTTTTAAACAAAGAGGCTCAAGAGGTGATGGTACCGGTGTTGGTGATAATGTG 951645 Query 164797 GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTA 164856 |||||||| ||| | | ||||| |||||||| || || ||||| ||||| | | Sbjct 951644 GTTAATCAATTGTTAGCCAAAATGGATGGTGTTGACCAGTTGAATAACATTTTGGTGATT 951585 Query 164857 GGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAA 164916 || |||||||| || | |||||| |||||| |||| |||||| | || ||| |||| ||| Sbjct 951584 GGGATGACCAATCGTCTTGATTTGATTGATAATGCGTTATTAAGGCCAGGTAGATTTGAA 951525 Query 164917 TTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 || || | || || |||||| || || | || || |||||||| Sbjct 951524 GTGCAAGTGGAGATTAAATTACCTGATAAGCATGGTCGTAGACAAATTTT 951475 >seq3 Length=2682731 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 19362 AAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATTTATC 19421 |||| ||||| || ||||| ||| | ||||||||| || |||||| | |||| Sbjct 1482590 AAATTGGTGACAAATTTGCCTCTAGACACGGTCAAAAAGGTACTATTGGTATCACTTATA 1482649 Query 19422 GTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAACCCAC 19481 | || ||||||||||| |||||| ||| || | || || ||| | ||||||| || | Sbjct 1482650 GACATGAAGATATGCCATTTACTGCAGAAGGGGTGGTTCCAGATTTGGTTATTAATCCGC 1482709 Query 19482 ATGCTTTTCCAAGTCGAATGAC 19503 ||||| ||||| ||| ||||| Sbjct 1482710 ATGCTATTCCATCTCGTATGAC 1482731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871947861200