Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 129 7e-25 seq1 86.0 8e-12 >seq2 Length=4155432 Score = 129 bits (142), Expect = 7e-25 Identities = 342/518 (66%), Gaps = 16/518 (3%) Strand=Plus/Minus Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 |||||| || ||||| || || | | || ||||| | || ||||| | || || || Sbjct 221051 ACCTTGAGAAGCTGGAGAACCTTGGTAAGTTTCATAAGTACCTTCAACAGCAGCTAACTC 220992 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | | ||||| | || || ||||| || || |||||||| ||||||||| | ||| Sbjct 220991 AGTGGAAGCCTCAATAGCAGCATGATAAATAGTTTCAAAAATTTGAGCATTCAATTGCTT 220932 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 ||||| || ||||| | | | ||| || || ||||| || | ||||||||| Sbjct 220931 AGCCTCTGGAGATTCAAATGGCAATCTCAACATCATGAAAACATCAGCCAAACCTTGGAC 220872 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATAAA 116323 ||| | |||| || | ||||||| ||||| ||| ||| ||| || ||||| | Sbjct 220871 ACCAACAGCAATAGGTCTGTGTCTCAAGTTAGATCTTCTAGC-TTCTGGGACTGGATAGA 220813 Query 116324 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 116383 | || || || |||| | | || | || ||||| ||||| || | ||| ||||| | || Sbjct 220812 AGTTTCTGTCAATAATCTTGTTCAAGTTCTTGGTCACAACTTTAGAGATATCATGCAACT 220753 Query 116384 TTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA---------GGAAGGGCGA 116434 | || | | | || | || ||||||| |||| | | || | || | Sbjct 220752 TATCAAAGTTATAAGTAGCAGATTCTTCAT---CATATTCAACGAAAGCTGGTAATGCAA 220696 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 || |||| ||||| |||| || |||| | ||| | || || | |||||| || Sbjct 220695 CAGAAGCCAAGTTACAAACAGCAGTTTCATTTTCATCTGAATATTCGACAATTTCACAAC 220636 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAG-TTCTTTTGATTTGACTTTGTGTTACACGCA 116553 |||| || ||| || || | ||||| |||||||| || || || | ||||| ||| Sbjct 220635 ACAAGTTGGAAGATTTGAT-AAGACCAAGATTCTTTTGGTTGGATTTAGCATTACAAGCA 220577 Query 116554 TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 || || || | ||| |||| || || || || ||||| Sbjct 220576 TCTTTATACAACATGAATGGAGTACCAGTTTCAGTTTG 220539 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/148 (73%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| ||||| |||| ||| | |||||| | ||||||||||| || | | ||| Sbjct 3400417 GGGAAAACACCATAGTAATCTCTACCAACAATTTTTAGACCAGCAACAGCTAAAGACTTA 3400476 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 ||||| ||||| || |||| || || ||||||||| | || | || || || ||| Sbjct 3400477 GCGGAGTCACCTTCTGTCAAAATAAGAGTACACTTTTCGCTTTCTCTGGTTCCTGCTTTG 3400536 Query 176951 TTCGCATCGTCCAAC-TTGGGAATACCA 176977 |||||||| ||||| ||||| ||||| Sbjct 3400537 TTCGCATCCACCAACTTTGGGTGTACCA 3400564 >seq1 Length=4909981 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| ||| ||| | ||| || || | ||| || ||||| || ||||| || ||| Sbjct 4056454 GCAAAGTCTGTGTGCAAACCTTCATCTCTGGAAATAAGTTCGTTGGAGAAAGTCAACCCT 4056395 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||||| ||| ||||||||||| || | | ||| || ||||||||||| || Sbjct 4056394 GGCATCAAACCCCTCTTTTTCAACCAGAAGATGGAAGCAAAAGAACCAGAGAAGAAAATA 4056335 Query 127640 CCCTCCACACACGCGAACGCAA 127661 || || ||| || || |||| Sbjct 4056334 CCTTCAACAGCAGCAAAGGCAA 4056313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507146318120