Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 161 8e-35 seq3 154 1e-32 seq4 140 2e-28 >seq1 Length=4909981 Score = 161 bits (178), Expect = 8e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || |||||||| | |||||||||||||||||||| || || | Sbjct 2135670 CCACCTCTCAATCTCAAAACCAAATGCAATGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2135729 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||| || |||||| | ||||||||||| || || || ||| Sbjct 2135730 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2135789 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | |||||| | || | |||||||||| ||| || Sbjct 2135790 ATACCTTCCTTGTCTTG-AATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 2135848 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || ||||| ||||||||||| || ||||| || ||||| Sbjct 2135849 TTCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACAAAGATTTGCAT 2135896 Score = 145 bits (160), Expect = 6e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || | |||||||||||||| ||||| || || | Sbjct 2135898 CCACCTCTCAATCTCAAAACCAAGTGCAATGTGGATTCTTTTTGGATGTTGTAGTCAGAC 2135957 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | || || |||||| | ||||||||||| || || || ||| Sbjct 2135958 AAGGTTCTGCCATCTTCCAACTGCTTACCAGCAAAAATCAATCTTTGTTGGTCTGGTGGA 2136017 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | |||||| | || | |||||||||| ||| || Sbjct 2136018 ATACCTTCCTTGTCTTG-AATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 2136076 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| || ||||| ||||||||||| || || || || |||||| Sbjct 2136077 TTCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACGAAAATTTGCATT 2136125 >seq3 Length=2682731 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || | |||||||| ||||| ||||| || || | Sbjct 829581 CCACCTCTCAATCTCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAC 829640 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | |||||| |||||| | ||||||||||| ||||| || ||| Sbjct 829641 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGA 829700 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||||||||| | || ||||||| | || | |||||| || ||| ||| Sbjct 829701 ATACCTTCTTTGTCTTGGATCTTGGATTTGACATTGTCAATAGTGTCGGAGGATTCGACT 829760 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || || || |||||||||||||| || || ||||| || Sbjct 829761 TCAAGGGTAATGGTCTTACCCGTTAAGGTTTTAACGAAAATTTGCATCTT 829810 >seq4 Length=2685930 Score = 140 bits (154), Expect = 2e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || |||||||| | || ||||||||||| || || || || | | Sbjct 2594949 CCACCTCTCAATCTCAAGACCAAATGCAAAGTAGATTCTTTTTGGATATTGTAGTCAGAA 2595008 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | |||||| |||||| | ||||||||||| || || || ||| Sbjct 2595009 AGGGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 2595068 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||| || | ||||||| | || | ||||| ||| ||| || Sbjct 2595069 ATACCTTCTTTGTCTTG-AATCTTGGATTTGACATTGTCAATGGTGTCGGAAGATTCGAC 2595127 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 ||| | || || ||||| ||||| || |||||||| || Sbjct 2595128 TTCCAAGGTAATGGTTTTACCAGTCAAAGTTTTAACGAA 2595166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219167135987