Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20fibuligera_20[genbank_20GCA_5F001936275.1_202017- 01-05] 7 sequences; 19,653,141 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 147 5e-30 seq3 134 3e-26 seq1 132 1e-25 >seq4 Length=2685930 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| |||||| | || || ||||| || ||| | || || ||| || |||||||| Sbjct 2595167 TTTCGTTAAAACTTTGACTGGTAAAACCATTACCTTGGAAGTCGAATCTTCCGACACCAT 2595108 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || |||||| |||||||| ||||||||||| || || || ||||| ||| || | Sbjct 2595107 TGACAATGTCAAATCCAAGATTCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATT 2595048 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||| || || ||||| | |||||||| || || ||| | || || || ||||||| Sbjct 2595047 GATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACCCTTTCTGACTACAATATCCAAAA 2594988 Query 178109 AGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || ||||| | || |||||| | ||| Sbjct 2594987 AGAATCTACTTTGCATTTGGTCTTGAGATTGAGA 2594954 >seq3 Length=2682731 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || || ||||| || || ||| ||| ||| Sbjct 829804 CAAATTTTCGTTAAAACCTTAACGGGTAAGACCATTACCCTTGAAGTCGAATCCTCCGAC 829745 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| ||||| || ||||||||||| || || || || || ||| Sbjct 829744 ACTATTGACAATGTCAAATCCAAGATCCAAGACAAAGAAGGTATTCCACCTGATCAACAA 829685 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | |||||||| || ||| | | || || ||| || Sbjct 829684 AGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATC 829625 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || |||| | || |||||| | ||| Sbjct 829624 CAAAAGGAATCCACCTTGCACTTGGTCTTGAGATTGAGA 829586 >seq1 Length=4909981 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || ||||| ||||| | || || ||| || ||| Sbjct 2136121 CAAATTTTCGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTCTGAC 2136062 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||| ||||| ||||| || || || ||||| ||| Sbjct 2136061 ACTATTGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAA 2136002 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 || | || || || || || ||| | |||||||| || || |||| | || || ||| | Sbjct 2136001 AGATTGATTTTTGCTGGTAAGCAGTTGGAAGATGGCAGAAC-CTTGTCTGACTACAACAT 2135943 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||||||||| ||| |||| | ||||||||| | ||| Sbjct 2135942 CCAAAAAGAATCCACATTGCACTTGGTTTTGAGATTGAGA 2135903 Score = 120 bits (132), Expect = 7e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| ||||| | || || ||| || ||| Sbjct 2135893 CAAATCTTTGTCAAGACCTTAACTGGTAAAACCATCACTTTGGAAGTTGAATCTTCTGAC 2135834 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||| ||||| ||||| || || || ||||| ||| Sbjct 2135833 ACTATTGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAACAA 2135774 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 || | || || || || || || | |||||||| || || |||| | || || ||| | Sbjct 2135773 AGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGCAGAAC-CTTGTCTGACTACAACAT 2135715 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||| ||||| | ||||||||| | ||| Sbjct 2135714 TCAAAAAGAATCCACATTGCATTTGGTTTTGAGATTGAGA 2135675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731092040358