Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq6 116 6e-21 seq1 116 6e-21 seq4 95.1 2e-14 >seq6 Length=1504906 Score = 116 bits (128), Expect = 6e-21 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || || || ||||| ||| || ||||| || || || Sbjct 99697 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGA-ATATTGTAGTCAGA 99639 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||||| ||| |||||||| || |||||||| ||||||||||| ||||| || || Sbjct 99638 CAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGG 99579 Query 146170 AATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 99578 GATACCTTCTTTGTCTTG 99561 >seq1 Length=3127730 Score = 116 bits (128), Expect = 6e-21 Identities = 110/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || ||||| ||||| ||| || || || || || || Sbjct 1885219 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTGTAGTCAGA 1885161 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| ||||||||||| |||||||||||||||||||| ||||| || || Sbjct 1885160 CAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1885101 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 1885100 AATACCTTCCTTGTCTTG 1885083 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || ||||| || || ||| || || || || || || Sbjct 1884763 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 1884705 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| ||||||||||| |||||||||||||||||||| ||||| || || Sbjct 1884704 CAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1884645 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 1884644 AATACCTTCCTTGTCTTG 1884627 Score = 111 bits (122), Expect = 2e-19 Identities = 109/138 (79%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| | ||||| || ||||| || || ||| || || || || || || Sbjct 1884991 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 1884933 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| ||||||||||| |||||||||||||||||||| ||||| || || Sbjct 1884932 CAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1884873 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| || ||||| Sbjct 1884872 AATACCTTCCTTGTCTTG 1884855 >seq4 Length=1632271 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | ||||| || ||||| ||||| || || || || || || Sbjct 76481 CCACCTCTCAATCTGAGGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 76540 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| || || || || || |||||||| ||||||||||| || || || ||| Sbjct 76541 AAGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 76600 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 76601 ATACCTTCTTTGTCTTG 76617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525991060480