Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq4 95.1 1e-14 seq6 91.5 1e-13 >seq1 Length=3127730 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||| || || || || ||||| | |||||||||| Sbjct 1885189 GTGGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAATTGTTTACCA 1885130 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| | ||| ||||| || || || ||||| ||||| ||| ||| || Sbjct 1885129 GCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGACTTG 1885070 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| ||||| | ||| | ||||| || ||||| || Sbjct 1885069 ACGTTGTCAATAGTGTCAGAGGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAGGTC 1885010 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 1885009 TTAACGAAGATTTGCATA 1884992 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || || || || ||||| | |||||||||| Sbjct 1884961 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAATTGTTTACCA 1884902 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| | ||| ||||| || || || ||||| ||||| ||| ||| || Sbjct 1884901 GCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGACTTG 1884842 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| ||||| | ||| | ||||| || ||||| || Sbjct 1884841 ACGTTGTCAATAGTGTCAGAGGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAGGTC 1884782 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 1884781 TTAACGAAGATTTGCATA 1884764 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| |||||||| || || || || ||||| | |||||||||| Sbjct 1884733 GTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAATTGTTTACCA 1884674 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| | ||| ||||| || || || ||||| ||||| ||| ||| || Sbjct 1884673 GCAAAAATCAATCTTTGTTGATCTGGTGGAATACCTTCCTTGTCTTGAATCTTTGACTTG 1884614 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| ||||| | ||| | ||||| || ||||| || Sbjct 1884613 ACGTTGTCAATAGTGTCAGAGGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAGGTC 1884554 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 1884553 TTAACAAAGATTTGCAT 1884537 >seq4 Length=1632271 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||| ||| || || || |||||| | || |||||| Sbjct 76511 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCGTCTTCCAACTGCTTACCA 76570 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||| || || || || || ||||||||||| ||| || ||| Sbjct 76571 GCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGAATCTTGGATTTG 76630 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||||| || || ||||| | || | || || ||||| | ||| Sbjct 76631 ACATTGTCAATGGTGTCCGAGGACTCCACTTCCAAGGTAATGGTTTTACCGGTAAGGGTT 76690 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 76691 TTGACGAAAATTTGCAT 76707 >seq6 Length=1504906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| || || | || ||||| ||||| || ||||| || | Sbjct 99697 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGAATATTGTAGTCAGAC 99638 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| |||||| | ||| ||||| || || Sbjct 99637 AAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGG 99578 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| || ||| | | || | ||||| | | ||| ||| Sbjct 99577 ATACCTTCTTTGTCTTGAATCTTAGATTTGACATTGTCAATGGTGTCGGAAGATTCAACT 99518 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | || | ||||| || ||||| ||||| ||||| Sbjct 99517 TCCAAGGTAATAGTCTTACCAGTCAAAGTTTTAACGAA 99480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014121142080