Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 199 9e-46 seq10 158 3e-33 seq6 152 1e-31 seq1 143 6e-29 >seq5 Length=1624186 Score = 199 bits (220), Expect = 9e-46 Identities = 578/875 (66%), Gaps = 35/875 (4%) Strand=Plus/Plus Query 268701 GATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTG 268760 |||||||| | ||||| || || | ||| || ||| |||||| ||| |||| | | Sbjct 609817 GATTTGTGCTTTTTCCTATCAAGTACCATGAGATTTGGCAGATGTATAAAAAGGCAGAGG 609876 Query 268761 CTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATT 268820 | ||||| ||||||| ||||| | ||| | | || || |||||||| | Sbjct 609877 CATCTTTCTGGACTGCCGAAGAGATTGATTTAGGAAAAGATATATATGATTGGAA----T 609932 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTC-------TTGCGTTTTTTGCAGTT 268873 || || | || | | || ||| | |||| | | ||||||||||| | Sbjct 609933 TACAAGCTTAACGATGGTGAGCGGTATTTCATATCCAGAGTTTTAGCGTTTTTTGCTGCC 609992 Query 268874 AGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCT 268933 ||||| || || || || ||||||||||| | || || | | |||||| || | Sbjct 609993 AGTGACGGCATTGTCAATGAAAATCTAGTGCAAAACTTTTCTACAGAGGTGCAAGTGAGC 610052 Query 268934 GAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTAC 268993 || || | ||| || || ||||| || ||| || ||||| || ||||| |||| || Sbjct 610053 GAGGCAAAATGCTTCTATGGATTTCAAATAATGATGGAAAACATACATTCCGAGACCTAT 610112 Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC--TT 269051 || | |||||||||||||| | ||| | || || | || || | ||| | Sbjct 610113 TCCTTACTTATAGATACTTATATCAAAGATCAGAAAGAGGC-AGAATTCT-TGTTCAATG 610170 Query 269052 CTATGAGAACTATGGACTGTG--TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | || |||||| || | | | | | | ||| |||| |||||| | ||||| || Sbjct 610171 CCATCGAAACTAT--ACCGAGCATCAAAGAGAAAGCTGACTGGGCTTTACGTTGGATCAA 610228 Query 269110 CGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 ||| | ||| || | |||| | | ||||| ||||| || |||||||| ||||| Sbjct 610229 CGACGACAACGCTTTGTTTGCAGAACGTCTTGTTGCCTTTGCTGCCGTAGAAGGAATATT 610288 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || ||||| | |||||||||||||| |||||||| || |||||||| || Sbjct 610289 TTTCTCAGGATCGTTTGCTTCAATCTTTTGGTTGAAAAAAAGAGGTCTCATGCCAGGTTT 610348 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 || || |||||||| ||||| |||||||||||||| || || || || || ||| | Sbjct 610349 GACGTTTTCTAACGAGTTGATTAGCAGGGACGAAGGCTTGCATACTGATTTTGCGTGTCT 610408 Query 269287 ATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGA 269346 || | |||| | || | | ||||| | || | | || | |||| || Sbjct 610409 AT--TGTACT-CTCATTTGCAAAACAAATTGGATAAAAAGATTGTTGAAAAAATCATCAC 610465 Query 269347 TTCAGCTGTTTCTGTAGAAACAGA---ATTTCTAACGGAAGCTCTATC--TATCGATCTT 269401 ||||||| || |||||| ||| ||||| | || ||||| || |||| | || Sbjct 610466 CGAAGCTGTTGCTATAGAAA-AGAAATATTTCGA--TGACGCTCTTTCTGTATCCTTGTT 610522 Query 269402 ATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTG 269461 | || |||||| || | |||| ||||| | |||| || | || | ||| | Sbjct 610523 A--GGAATGAATGCCACTTTAATGAACCAATATGTGGAGTTTGTTGCCGACCGGTTGTTA 610580 Query 269462 GTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAAT 269521 || || ||||| | |||| ||||||||| | ||||| ||| ||| ||||| || Sbjct 610581 GTATCCTTAGGTAACAATAAAGTATATAACGTGAACAATCCTTTTGATTTCATGGAAAAC 610640 Query 269522 ATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAA 269556 || || || | ||| ||| | ||||| |||||||| Sbjct 610641 ATCTCCTTGGCAGGAAAGACGAATTTTTTCGAGAA 610675 >seq10 Length=744508 Score = 158 bits (174), Expect = 3e-33 Identities = 169/221 (76%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 269079 aaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCCTTAC--GGAGAAAGGT 269135 |||| | || ||||| ||| |||||| ||||| | | ||||| | ||||| | Sbjct 46127 AAAAGGCCGACTGGGCCTTGAGATGGATCAACGACGACCAGGCCTTGTTTGCTGAAAGAT 46068 Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 | ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| |||| || | Sbjct 46067 TGGTTGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCGGGCTCTTTTGCTTCTATTTTCT 46008 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 ||||||| |||||||| | ||||| || || || || |||||||||||||| |||| | Sbjct 46007 GGTTGAAAAAAAGAGGTTTGATGCCGGGCTTGACGTTTTCTAACGAATTGATCTGCAGAG 45948 Query 269256 ACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACT 269296 |||||||||| ||| |||||| ||||| || || ||| || Sbjct 45947 ACGAAGGTTTGCACACCGACTTTGCTTGCTTGTTGTTTTCT 45907 >seq6 Length=1504906 Score = 152 bits (168), Expect = 1e-31 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || |||||||| |||||||| | ||||| || ||||||| ||| Sbjct 99673 TGCAAGGTGGATTCCTTTTGAATATTGTAGTCAGACAAGGTTCTGCCATCTTCTAATTGC 99614 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||||||||| || || |||||||| || |||||||| Sbjct 99613 TTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTA 99554 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | ||| ||||| || | ||| ||| || ||| || || | ||||||||||||||||| Sbjct 99553 GATTTGACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAGGTAATAGTCTTACCAGTC 99494 Query 104537 AGTGTTTTTACAAA 104550 | ||||| || || Sbjct 99493 AAAGTTTTAACGAA 99480 >seq1 Length=3127730 Score = 143 bits (158), Expect = 6e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| || | || || || || || || ||||| || |||||| Sbjct 1884766 ATACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCA 1884707 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||| ||||||| |||||| ||||||||||| | || |||||||| || Sbjct 1884706 GACAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 1884647 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || || || || | || || | ||| Sbjct 1884646 GGAATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1884587 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || | || || ||||||||||| | || || ||||| || |||||| ||||| Sbjct 1884586 ACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCATTATGTGT 1884530 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | ||||| || | || || || ||||| || ||||| || |||||||| Sbjct 1885219 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 1885160 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||||| |||||| ||||||||||| | || |||||||| || || Sbjct 1885159 AAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 1885100 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || |||||||||| || || || || | || || | ||| || Sbjct 1885099 ATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACT 1885040 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || ||||||||||| | || || || || || ||||| Sbjct 1885039 TCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884993 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | ||||| || | || || || || || || ||||| || |||||| Sbjct 1884994 ATACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCA 1884935 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||| ||||||| |||||| ||||||||||| | || |||||||| || Sbjct 1884934 GACAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGT 1884875 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || || || || | || || | ||| Sbjct 1884874 GGAATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1884815 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||||||||| | || || || || || ||||| Sbjct 1884814 ACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397750899152