Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 129 4e-25 seq1 125 5e-24 seq4 87.8 1e-12 >seq6 Length=1504906 Score = 129 bits (142), Expect = 4e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | ||| ||||| || | ||| ||||||||||||||||| ||||| Sbjct 99698 ACCACCTCTCAATCTCAAAACCAAGTGCAAGGTGGATTCCTTTTGAATATTGTAGTCAGA 99639 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || |||||||| || || ||||| || | | ||||||||| | || Sbjct 99638 CAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGG 99579 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||||||||| ||| || || ||||| | | || || | |||||| Sbjct 99578 GATACCTTCTTTGTCTTGAATCTTAGATTTGACATTGTCAATGGTGTCGGAAGATTCAAC 99519 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 ||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 99518 TTCCAAGGTAATAGTCTTACCAGTCAAAGTTTTAACGAA 99480 >seq1 Length=3127730 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| || | |||| |||||||||||| ||||| |||| Sbjct 1884993 TACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 1884934 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || ||||||||||| || ||||| || | | ||||||||| | | Sbjct 1884933 ACAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTG 1884874 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| ||| ||| || || | | ||| || ||||| Sbjct 1884873 GAATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAA 1884814 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||| |||||||| || ||||| || ||||| Sbjct 1884813 CTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884765 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||||||||| | | ||||| || | |||| |||||||||||| ||||| |||| Sbjct 1884765 TACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 1884706 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | || ||||||||||| || ||||| || | | ||||||||| | | Sbjct 1884705 ACAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTG 1884646 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| ||| ||| || || | | ||| || ||||| Sbjct 1884645 GAATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAA 1884586 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || ||||| |||||||| || || || || ||||| Sbjct 1884585 CTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCAT 1884537 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | | ||||| || | |||| ||||||||||| ||||| ||||| Sbjct 1885220 ACCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAGA 1885161 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || ||||||||||| || ||||| || | | ||||||||| | || Sbjct 1885160 CAAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1885101 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||| ||| ||| || || | | ||| || |||||| Sbjct 1885100 AATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAAC 1885041 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || ||||| |||||||| || ||||| || ||||| Sbjct 1885040 TTCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884993 >seq4 Length=1632271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | | ||||| || | |||| |||||||| || ||||| || || Sbjct 76480 ACCACCTCTCAATCTGAGGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCGGA 76539 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | |||| || || || || || ||||| || | | |||||| || | || Sbjct 76540 CAAGGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGG 76599 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||| ||| || || ||||| | | || || || || Sbjct 76600 AATACCTTCTTTGTCTTGAATCTTGGATTTGACATTGTCAATGGTGTCCGAGGACTCCAC 76659 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || ||||| |||||||| || | |||||| ||||| || ||||| || Sbjct 76660 TTCCAAGGTAATGGTTTTACCGGTAAGGGTTTTGACGAAAATTTGCATCTT 76710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947020384564