Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03-
01] 44 sequences; 16,719,687 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 145 7e-30
seq4 114 1e-20
seq6 102 7e-17
>seq1
Length=3127730
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| ||||| ||||| ||||||| | ||||| || || ||
Sbjct 1884536 AATGCAAATCTTTGTTAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCCTC 1884595
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||| || | ||| |||| | ||| ||||| ||||| |||||||| || |
Sbjct 1884596 TGACACTATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATTCCACCAGATC 1884654
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| | | |||||||| || |||||||||||||||| | | || || || ||||
Sbjct 1884655 AACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACCTTGTCTGACTACA 1884714
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| |||||||| || ||||| | || || || || || | ||||| ||
Sbjct 1884715 ACATTCAAAAGGAGTCCACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 1884763
Score = 143 bits (158), Expect = 2e-29
Identities = 170/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| ||||| ||||||| | ||||| || || |||
Sbjct 1884993 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCCTCT 1885052
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| |||| | ||| ||||| ||||| |||||||| || ||
Sbjct 1885053 GACACTATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATTCCACCAGATCA 1885111
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | |||||||| || |||||||||||||||| | | || || || |||||
Sbjct 1885112 ACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACCTTGTCTGACTACAA 1885171
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| |||||||| | || || || || || | ||||| ||
Sbjct 1885172 CATTCAAAAGGAATCCACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 1885219
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| ||||| ||||||| | ||||| || || |||
Sbjct 1884765 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCCTCT 1884824
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| |||| | ||| ||||| ||||| |||||||| || ||
Sbjct 1884825 GACACTATTGACAACGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATTCCACCAGATCA 1884883
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | |||||||| || |||||||||||||||| | | || || || |||||
Sbjct 1884884 ACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACCTTGTCTGACTACAA 1884943
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| || ||||| | || || || || || | ||||| ||
Sbjct 1884944 CATTCAAAAGGAGTCCACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 1884991
>seq4
Length=1632271
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | ||||||||| |||| || | ||||||||||| ||
Sbjct 76707 ATGCAAATTTTCGTCAAAACCCTTACCGGTAAAACCATTACCTTGGAAGTGGAGTCCTCG 76648
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || || | || | ||| ||||||||||| |||||||| |||
Sbjct 76647 GACACCATTGA--CAATGTCAAATCCAAGATTCAA-GACAAAGAAGGTATTCCACCAGAC 76591
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| | | || ||||| || || || || ||||| | | || || ||| |||
Sbjct 76590 CAACAAAGATTGATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACCTTGTCCGACTAC 76531
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||| |||||||| | || || || || || | ||||| ||
Sbjct 76530 AACATCCAAAAGGAATCCACTTTGCACTTGGTCCTCAGATTGAGAGGTGG 76481
>seq6
Length=1504906
Score = 102 bits (112), Expect = 7e-17
Identities = 139/191 (73%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || || |||||||| ||||| | || || | ||||| || || || ||||| ||
Sbjct 99480 TTCGTTAAAACTTTGACTGGTAAGACTATTACCTTGGAAGTTGAATCTTCCGACACCATT 99539
Query 25068 GAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124
|| || || || | || | ||| ||||||||||| || |||||||| ||||| |
Sbjct 99540 GA--CAATGTCAAATCTAAGATTCAA-GACAAAGAAGGTATCCCACCTGATCAACAAAGA 99596
Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184
| || ||||| || || ||||||||||||| | || || || ||||||||||||
Sbjct 99597 TTGATCTTTGCTGGTAAGCAATTAGAAGATGGCAGAACCTTGTCTGACTACAATATTCAA 99656
Query 25185 AAAGAATCCAC 25195
|| ||||||||
Sbjct 99657 AAGGAATCCAC 99667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327767627860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |