Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomycopsis_20malanga_20[genbank_20GCA_5F001599215.1_202016-03- 01] 44 sequences; 16,719,687 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 8e-15 seq1 95.1 3e-14 >seq6 Length=1504906 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | | || | || ||||||||||| || || || || Sbjct 99662 TTCCTTTTGAATATTGTAGTCAGACAAGGTTCTGCCATCTTCTAATTGCTTACCAGCAAA 99603 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | |||||| | |||||| |||||||| || || || || | ||| || || Sbjct 99602 GATCAATCTTTGTTGATCAGGTGGGATACCTTCTTTGTCTTGAATCTTAGATTTGACATT 99543 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||||| ||||| | || || ||||| || |||| ||| || || Sbjct 99542 GTCAATGGTGTCGGAAGATTCAACTTCCAAGGTAATAGTCTTACCAGTCAAAGTTTTAAC 99483 Query 288462 GAA 288464 ||| Sbjct 99482 GAA 99480 >seq1 Length=3127730 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | |||||| || | || | ||| || ||||| || || ||||| | Sbjct 1884763 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1884704 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || |||||||||||||| || || || |||| | |||||| ||| Sbjct 1884703 AAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 1884644 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || ||||| || |||| || ||||| ||| Sbjct 1884643 ATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACT 1884584 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 || | ||||| ||||| || |||| ||||| || || || |||||||||| Sbjct 1884583 TCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACAAAGATTTGCATTATGT 1884532 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | |||||| || | || | ||| ||| ||||| || || ||||| | Sbjct 1885219 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAC 1885160 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || |||||||||||||| || || || |||| | |||||| ||| Sbjct 1885159 AAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 1885100 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || ||||| || |||| || ||||| ||| Sbjct 1885099 ATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACT 1885040 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 1885039 TCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884993 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | |||||| || | || | ||| || ||||| || || ||||| | Sbjct 1884991 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 1884932 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || |||||||||||||| || || || |||| | |||||| ||| Sbjct 1884931 AAGGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCTGGTGGA 1884872 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || ||||| || |||| || ||||| ||| Sbjct 1884871 ATACCTTCCTTGTCTTGAATCTTTGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACT 1884812 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 1884811 TCCAAAGTGATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 1884765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653734969832